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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • cytosol 2
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plasma membrane, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2B01G113800.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G29340.1 TraesCS1A01G308700.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS1A01G308800.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS1B01G319300.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS1D01G308000.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS2B01G113800.2 AT2G41100.1 17360592
AT1G29340.1 TraesCS3A01G184500.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS3A01G191900.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS3A01G335000.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS3B01G219900.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS3B01G365900.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS3D01G188600.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS3D01G194500.2 AT2G41100.1 17360592
AT1G29340.1 TraesCS3D01G328300.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS4B01G131100.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS4D01G126100.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS5A01G057100.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS5A01G057200.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS5A01G139700.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS5B01G059900.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS5B01G137100.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS5D01G068000.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS5D01G068100.1 AT2G41100.1 17360592
AT1G29340.1 TraesCS5D01G153400.1 AT2G41100.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G180400.1 Wheat plastid 99.03 99.03
TraesCS6B01G222200.1 Wheat cytosol 57.1 98.81
HORVU6Hr1G041430.8 Barley mitochondrion 97.24 85.56
Os02t0234300-01 Rice cytosol 67.59 84.34
EES04812 Sorghum plastid 83.17 82.72
Zm00001d016225_P001 Maize plastid 82.62 82.17
Zm00001d053544_P001 Maize mitochondrion, plastid 79.31 81.56
GSMUA_Achr2P15530_001 Banana mitochondrion 48.28 53.03
GSMUA_Achr7P09440_001 Banana mitochondrion 46.07 52.35
GSMUA_Achr9P28820_001 Banana mitochondrion 41.79 50.58
GSMUA_Achr10P... Banana mitochondrion 30.76 49.34
KRH11061 Soybean mitochondrion, plastid 45.38 45.95
KRH21208 Soybean mitochondrion 45.24 45.81
VIT_10s0003g01730.t01 Wine grape mitochondrion 45.52 45.45
KRH42917 Soybean mitochondrion 44.14 44.76
CDX90186 Canola mitochondrion 43.86 44.6
Solyc02g072080.1.1 Tomato cytosol, mitochondrion 44.41 44.48
KRH59027 Soybean mitochondrion 43.72 44.34
PGSC0003DMT400073254 Potato cytosol 44.14 44.2
CDY43332 Canola mitochondrion 43.59 43.95
Bra010834.1-P Field mustard mitochondrion 43.59 43.95
Bra032309.1-P Field mustard plastid 42.48 43.75
CDY48332 Canola mitochondrion, plastid 42.34 43.61
CDX94661 Canola plastid 42.76 43.6
AT1G29340.1 Thale cress plastid 43.72 43.48
CDX99816 Canola plastid 42.34 42.4
CDY43686 Canola plastid 35.59 39.03
Bra021899.1-P Field mustard plastid 35.59 39.03
CDY37666 Canola cytosol, plastid 35.45 38.88
TraesCS1A01G300000.1 Wheat cytosol 33.24 36.08
TraesCS3A01G345800.1 Wheat plastid 33.24 35.29
TraesCS7A01G001900.1 Wheat cytosol 24.41 33.4
TraesCS4A01G498700.1 Wheat plastid 26.62 30.49
TraesCS5A01G078400.1 Wheat cytosol 27.17 28.8
TraesCS2A01G276400.1 Wheat nucleus 18.21 28.7
TraesCS6A01G293600.1 Wheat cytosol 25.24 28.55
TraesCS7A01G293900.1 Wheat cytosol 24.69 27.8
TraesCS7A01G549700.1 Wheat cytosol 24.41 27.4
TraesCS4A01G097700.1 Wheat cytosol 26.9 27.27
TraesCS2A01G193000.1 Wheat cytosol 13.1 26.32
TraesCS2A01G475600.1 Wheat cytosol, plasma membrane 24.97 26.19
TraesCS3A01G390200.1 Wheat cytosol 15.45 25.51
TraesCS5A01G198800.1 Wheat cytosol, plasma membrane 23.72 24.54
TraesCS2A01G190800.1 Wheat cytosol 14.21 23.62
TraesCS3A01G521300.1 Wheat cytosol 23.59 20.58
TraesCS3A01G410100.1 Wheat cytosol 14.9 20.42
TraesCS3A01G410000.1 Wheat cytosol 16.14 18.45
Protein Annotations
Gene3D:1.25.10.10Gene3D:1.25.10.110Gene3D:3.30.40.10MapMan:35.1InterPro:ARM-likeInterPro:ARM-type_fold
InterPro:Armadilloncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488
GO:GO:0005515GO:GO:0006464GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009605
GO:GO:0009607GO:GO:0009814GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538
InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514PFAM:PF04564
PFscan:PS50176PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF76SMART:SM00185SMART:SM00504
SUPFAM:SSF48371SUPFAM:SSF57850EnsemblPlantsGene:TraesCS6A01G190700EnsemblPlants:TraesCS6A01G190700.1InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHD
TIGR:cd16664SEG:seg::::
Description
No Description!
Coordinates
chr6A:+:255179726..255181903
Molecular Weight (calculated)
77972.3 Da
IEP (calculated)
8.612
GRAVY (calculated)
0.054
Length
725 amino acids
Sequence
(BLAST)
001: MDSPASASSP VEFLLRCPTP RRRRLPLAGA FFAPTALAGA SLLRALASLA AGLLATPRPP SQPRNFAALA RRLALLSALL DSLLLDAPDR FSDAANLCFR
101: ELYVVLFRAD LLVSYVASAG RAWALLRGAH LAASFRDLDA ELAVVLDVIP AASIRLSHDA AGHLDLLRSQ CRRRSPAQYH DPDEAALRDR LLAAVQQFEL
201: GQPPPLKSLL SDVGISDAAS CQAEIDYLEE QILSQEEDTD LLLVGGVLAL LRYSLFSQFD PGNAKAARYW PSAGNLQRLP SWGGGGCDDT SFSVPKEFSC
301: PISLDLMRDP VVASTGQTYD RPSIIQWIGE GHSTCPNSGQ ALADNRLVPN RALRSLISQW CGMYCFQYDS PESNEGMAEC VATACSSKAA IEANKATARI
401: LVRMLVESSD SSKAVAAKEI RLLAKAGKRN RAFIAELGAI PLLCRLLLSS DQIAQENAVT ALLNLSIYEP NKTRIMEQEG CLWLIVSVLQ NGWTTEAREN
501: AAATLFSLSV VHDYKKMIMN EPGALEKLAC MLKKGTPRGR KDAVMALFNL STHAESSARM LESSAVVALI ESLRNDTVSE EAAGALALLM KQPSVVHLVG
601: SSETVISSLV GLMRRGTPKG KENAVSALYE ICRRGGSALV RRVAKIPGLN TVIQNIMLTG TKRAKKKASL IVKMCQRSQM PSAMSLGTSL RVVDHSLVGN
701: SSLRRAASFG SGELSNPVSI SVHVP
Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)
001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL
Arabidopsis Description
PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.