CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
endoplasmic reticulum 1
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	KRG89812	AT2G41100.1	17360592
AT1G29340.1	KRG94975	AT2G41100.1	17360592
AT1G29340.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42917	Soybean	mitochondrion	94.13	94.13
KRH11061	Soybean	mitochondrion, plastid	80.28	80.17
KRH21208	Soybean	mitochondrion	80.28	80.17
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	71.61	70.72
PGSC0003DMT400073254	Potato	cytosol	71.33	70.44
VIT_10s0003g01730.t01	Wine grape	mitochondrion	70.77	69.7
AT1G29340.1	Thale cress	plastid	70.35	69.0
CDX90186	Canola	mitochondrion	68.67	68.86
CDY43332	Canola	mitochondrion	68.67	68.29
Bra010834.1-P	Field mustard	mitochondrion	68.39	68.01
Bra032309.1-P	Field mustard	plastid	65.03	66.05
CDX94661	Canola	plastid	65.59	65.96
CDY48332	Canola	mitochondrion, plastid	64.62	65.62
CDX99816	Canola	plastid	66.43	65.61
GSMUA_Achr2P15530_001	Banana	mitochondrion	51.19	55.45
CDY37666	Canola	cytosol, plastid	50.91	55.07
Bra021899.1-P	Field mustard	plastid	50.49	54.61
CDY43686	Canola	plastid	50.21	54.31
GSMUA_Achr7P09440_001	Banana	mitochondrion	48.25	54.08
GSMUA_Achr9P28820_001	Banana	mitochondrion	44.76	53.42
TraesCS6B01G222200.1	Wheat	cytosol	30.91	52.74
GSMUA_Achr10P...	Banana	mitochondrion	32.59	51.55
Os02t0234300-01	Rice	cytosol	39.3	48.36
Zm00001d016225_P001	Maize	plastid	46.85	45.95
EES04812	Sorghum	plastid	46.71	45.82
Zm00001d053544_P001	Maize	mitochondrion, plastid	44.9	45.53
TraesCS6D01G180400.1	Wheat	plastid	44.34	43.72
TraesCS6A01G190700.1	Wheat	plastid	44.34	43.72
KRH17146	Soybean	cytosol	13.29	39.92
HORVU6Hr1G041430.8	Barley	mitochondrion	44.2	38.35
KRH65448	Soybean	plastid	25.59	37.5
KRH04403	Soybean	mitochondrion	18.74	37.02
KRH15451	Soybean	cytosol	13.43	35.42
KRH76105	Soybean	cytosol, plastid	34.27	34.9
KRG91959	Soybean	cytosol	30.49	34.55
KRH34817	Soybean	cytosol	30.35	34.34
KRH73275	Soybean	cytosol	24.34	34.18
KRG97080	Soybean	cytosol, nucleus	20.98	34.09
KRH68828	Soybean	cytosol	20.42	33.95
KRH29807	Soybean	cytosol	31.19	33.74
KRH24807	Soybean	cytosol	31.19	33.69
KRH03317	Soybean	cytosol, plastid	30.63	32.4
KRH00831	Soybean	cytosol	28.39	31.97
KRH40395	Soybean	cytosol	27.83	31.34
KRH05594	Soybean	cytosol	15.38	31.25
KRG92593	Soybean	cytosol	19.3	31.15
KRG89279	Soybean	cytosol	28.11	30.88
KRG99865	Soybean	cytosol	26.57	30.79
KRH50347	Soybean	nucleus	27.41	29.97
KRH52088	Soybean	cytosol	13.71	29.97
KRH46608	Soybean	cytosol	18.88	29.28
KRH33490	Soybean	cytosol	21.4	29.14
KRH54418	Soybean	cytosol, plastid	27.83	29.14
KRG99581	Soybean	cytosol	18.74	29.07
KRH69547	Soybean	cytosol, plastid	28.81	28.89
KRH01984	Soybean	cytosol	15.38	25.88
KRH51173	Soybean	cytosol	15.38	25.7
KRH11541	Soybean	plastid	16.08	25.16
KRH36562	Soybean	plastid	15.8	24.67
KRH72794	Soybean	plasma membrane	26.43	23.25
KRG98177	Soybean	cytosol	27.13	23.07
KRH30135	Soybean	cytosol	26.85	22.91
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.76	21.74
KRH67390	Soybean	cytosol, plastid	24.62	20.56
KRH32190	Soybean	cytosol	18.04	19.46

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100797462	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02003299	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G162100	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1K429	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRH59027	ProteinID:KRH59027	ProteinID:KRH59027.1	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002339B2E	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:35330243..35333349

Molecular Weight (calculated)

78566.2 Da

IEP (calculated)

7.389

GRAVY (calculated)

0.054

Length

715 amino acids

Sequence
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLVPVDLSDV ALLETLISVA SDVASCFSGH RFPFQRRNSR ALIGKVEIFR SMLECLRDSA AAGALTPTAV LCLKEFYLLL
101: YRSKILLDYC AQSSKLWLLL QNHCVSGHFH DLSQEFSTLL DVFPVGEVGL SDDVREQIEL LQRQSKRAKL FIDKKDDVLR TRFFWFLEEF ESGRVPDSKD
201: LRCFFVDKLR ILDAKSCRVE IEALEEQIVN HEGDVEPTVP VLNGMVAITR YCRFLLFGFE EELEIEIQKK GRKRLIAQEI AETFLTVPKD FCCPISLDLM
301: CDPVIISTGQ TYDRRSIWRW MEEGHCTCPK TGQLLSHNRL VPNRALRNMI MQWCSAHGVP YDPPEGVDAS VEMFVSACPS KASLEANRGA TTLLIQQLAD
401: GSQAAQTVAA REIRLLAKTG KENRAFIAQA GAIPHLRNLL SSPNAVAQEN SVTALLNLSI FERNKSMIME EEGCLGSIVE VLRFGHTTEA RENAAATLFS
501: LSAVHDYKKR IADNVGAVEA LAWLLQEGTQ RGKKDAVTAL FNLSTHTENC LRMIEAGAVK AMVVALGNEG VAEEAAGALA LIVRQPVGAM AVVREEAAVA
601: GLIGMMRCGT PRGKENAVAA LLELCRSGGA AATERVVRAP ALVGLLQTLL FTGTKRARRK AASLARVFQR CENASLHYGG LGVGYSFASD SASTRNTTTF
701: VSDVSLPMSI SVPVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.