CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91959
KRG99108
KRH04403
KRH08093
KRH13458
KRH13893
KRH13899
KRH19640
KRH21856
KRH24006
KRH27396
KRH27971
KRH28787
KRH29310
KRH32256
KRH34817
KRH43461
KRH45889
KRH53808
KRH64138
KRH69796
KRH76667
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	KRH19640	AT1G04130.1	21798944
AT3G54850.1	KRH32256	AT1G04130.1	21798944
AT3G54850.1	KRH13458	AT1G53510.1	21798944
AT3G54850.1	KRH21856	AT1G53510.1	21798944
AT3G54850.1	KRG99108	AT1G69690.1	21798944
AT3G54850.1	KRH45889	AT1G69690.1	21798944
AT3G54850.1	KRH24006	AT3G48150.1	21798944
AT3G54850.1	KRH27971	AT3G48150.1	21798944
AT3G54850.1	KRH29310	AT3G48150.1	21798944
AT3G54850.1	KRH77487	AT3G48150.1	21798944
AT3G54850.1	KRG91959	AT3G54850.1	21798944
AT3G54850.1	KRH04403	AT3G54850.1	21798944
AT3G54850.1	KRH34817	AT3G54850.1	21798944
AT3G54850.1	KRH08093	AT4G36110.1	21798944
AT3G54850.1	KRH28787	AT4G36110.1	21798944
AT3G54850.1	KRH69796	AT4G36110.1	21798944
AT3G54850.1	KRH76667	AT4G36110.1	21798944
AT3G54850.1	KRH53808	AT4G39470.1	21798944
AT3G54850.1	KRH64138	AT4G39470.1	21798944
AT3G54850.1	KRH13893	AT5G58950.1	21798944
AT3G54850.1	KRH13899	AT5G58950.1	21798944
AT3G54850.1	KRH27396	AT5G58950.1	21798944
AT3G54850.1	KRH43461	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34817	Soybean	cytosol	94.48	54.11
KRG91959	Soybean	cytosol	93.37	53.57
KRH17146	Soybean	cytosol	32.6	49.58
VIT_13s0019g04710.t01	Wine grape	cytosol	78.18	45.06
Solyc11g008390.1.1	Tomato	cytosol	76.24	44.23
PGSC0003DMT400019235	Potato	cytosol	75.97	44.07
TraesCS7A01G001900.1	Wheat	cytosol	64.09	43.77
AT3G54850.1	Thale cress	cytosol	72.1	41.3
Bra007105.1-P	Field mustard	cytosol	71.27	40.69
CDX78273	Canola	cytosol	71.27	40.69
EER87680	Sorghum	cytosol	64.64	38.94
HORVU7Hr1G000780.1	Barley	cytosol	63.26	38.81
Os06t0102700-01	Rice	plasma membrane	64.64	38.74
TraesCS7D01G001600.2	Wheat	cytosol, plastid	64.09	38.54
KRH15451	Soybean	cytosol	28.73	38.38
Zm00001d045632_P004	Maize	cytosol, mitochondrion	64.09	36.83
TraesCS4A01G498700.1	Wheat	plastid	64.09	36.65
KRH52088	Soybean	cytosol	32.6	36.09
GSMUA_Achr3P00280_001	Banana	cytosol	56.63	34.0
KRH24807	Soybean	cytosol	60.77	33.23
KRH29807	Soybean	cytosol	60.5	33.13
KRH05594	Soybean	cytosol	32.04	32.95
KRH68828	Soybean	cytosol	37.85	31.86
GSMUA_Achr1P24290_001	Banana	cytosol	52.76	31.26
KRG97080	Soybean	cytosol, nucleus	37.85	31.14
KRG89279	Soybean	cytosol	54.42	30.26
KRH50347	Soybean	nucleus	54.14	29.97
KRG99581	Soybean	cytosol	37.02	29.07
KRH46608	Soybean	cytosol	37.02	29.07
CDX73439	Canola	plastid	70.99	28.52
KRH51173	Soybean	cytosol	33.43	28.27
KRH01984	Soybean	cytosol	33.15	28.24
KRG92593	Soybean	cytosol	33.98	27.77
KRH00831	Soybean	cytosol	48.07	27.4
KRH40395	Soybean	cytosol	47.24	26.93
KRH36562	Soybean	plastid	33.98	26.86
KRG99865	Soybean	cytosol	45.58	26.74
KRH11541	Soybean	plastid	33.7	26.7
KRH33490	Soybean	cytosol	35.36	24.38
KRH73275	Soybean	cytosol	32.32	22.99
KRH30135	Soybean	cytosol	47.79	20.64
KRH72794	Soybean	plasma membrane	45.86	20.42
KRG98177	Soybean	cytosol	47.24	20.33
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.65	19.41
KRH11061	Soybean	mitochondrion, plastid	37.85	19.13
KRH21208	Soybean	mitochondrion	37.29	18.85
KRH67390	Soybean	cytosol, plastid	44.48	18.81
KRH59027	Soybean	mitochondrion	37.02	18.74
KRH42917	Soybean	mitochondrion	35.64	18.04
KRH03317	Soybean	cytosol, plastid	32.32	17.31
KRH76105	Soybean	cytosol, plastid	33.15	17.09
KRH54418	Soybean	cytosol, plastid	31.77	16.84
KRH69547	Soybean	cytosol, plastid	31.22	15.85
KRH32190	Soybean	cytosol	25.69	14.03
KRH65448	Soybean	plastid	18.51	13.73

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02010412	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlantsGene:GLYMA_17G159900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K7MLX6
EnsemblPlants:KRH04403	ProteinID:KRH04403	ProteinID:KRH04403.1	PFAM:PF00514	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF111	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002962449	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:13822321..13824539

Molecular Weight (calculated)

38574.7 Da

IEP (calculated)

7.738

GRAVY (calculated)

-0.104

Length

362 amino acids

Sequence
(BLAST)

001: MRQKARSLLK WLDAGYKTCP KTQQTLVHTT LTPNYVLKSL IALWCESNGI ELPKKQGNCR TKKCGGSSLS DCDRTAIGAL LDKLTSNDIE QQKAAGGELR
101: LLGKRNADNR VCIAEVGAIP PLVDLLSSSD PQTQEHAVTA LLNLSINESN KGTIVNVGAI PDIVDVLKNG NMEARENAAA TLFSLSVLDE NKVQIGAAGA
201: IPALIKLLCE GTPTGKKDVA TAIFNLSIYQ GNKAKAVKAG IVAPLIQFLK DAGGGMVDEA LAIMEILASH HEGRVAIGQA EPIHILVEVI RTGSPRNREN
301: VAAVLWSLCT GDPLQLKLAK EHGAEAALQE LSENGTDRAK RKAGSILELL QRMEGVDNLQ SS

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.