CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19640	Soybean	cytosol	93.06	92.8
VIT_07s0005g04590.t01	Wine grape	cytosol	70.28	69.51
Bra032529.1-P	Field mustard	cytosol	63.33	63.69
CDY10078	Canola	cytosol	63.33	62.64
AT1G04130.1	Thale cress	cytosol	62.5	62.5
CDY32528	Canola	cytosol	64.72	61.97
GSMUA_Achr3P25620_001	Banana	cytosol	61.94	61.94
PGSC0003DMT400019944	Potato	cytosol	62.78	60.75
TraesCS5A01G389800.1	Wheat	cytosol	53.33	52.32
TraesCS5B01G394800.1	Wheat	cytosol	53.61	52.16
TraesCS5D01G399700.1	Wheat	cytosol	53.61	52.16
OQU90987	Sorghum	cytosol	49.72	51.88
HORVU5Hr1G095150.2	Barley	cytosol	53.33	51.75
Zm00001d034028_P003	Maize	cytosol	51.67	49.87
Solyc09g064380.2.1	Tomato	cytosol	17.5	49.22
Os03t0750100-00	Rice	mitochondrion	35.56	36.26

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100788789	MapMan:35.2	EMBL:ACUP02006105	EnsemblPlantsGene:GLYMA_10G040900	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1L8H9	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH32256	ProteinID:KRH32256	ProteinID:KRH32256.1	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF487
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000233D26A

Description

hypothetical protein

Coordinates

chr10:+:3591102..3596087

Molecular Weight (calculated)

40789.8 Da

IEP (calculated)

6.036

GRAVY (calculated)

-0.382

Length

360 amino acids

Sequence
(BLAST)

001: MALWMEKGSE PLTESEKADL EAIAALKESA AFEFKEKGNQ YVKMGKKHYS DAIDCYTRAI DQKALSDSET SILFANRAHV NLLLGNLRRA LTDSNEALKL
101: CPSNIKAIYR ASKASLSLDM LAEAREYCLK GLQFDPNNED LKKLDRLIGL KISEKEKHEA EFSKAVAETK ELASVIEHRG LKIGKAMYRE LIGLRKPVLD
201: KSNILHWPVV LLYAEVMSSD FIEDFCETDM FSVHLDMVFA EDQPLSWDVE TNYKREFVEL YYEAGSGVSL SKEKLIHCLL EGTAAAHREG VGDEEKDTIE
301: DYKQHTGPPK WIKVNERRTL HDVLKEPNFI IPGIPVFYVV SKQSSFYGKF KAGKWAPPSI

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.