Factsheet for PGSC0003DMT400019944

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g064380.2.1	Tomato	cytosol	30.11	87.5
VIT_07s0005g04590.t01	Wine grape	cytosol	66.94	68.41
KRH19640	Soybean	cytosol	62.1	63.99
KRH32256	Soybean	cytosol	60.75	62.78
Bra032529.1-P	Field mustard	cytosol	59.41	61.73
AT1G04130.1	Thale cress	cytosol	59.68	61.67
CDY32528	Canola	cytosol	61.29	60.64
CDY10078	Canola	cytosol	59.14	60.44
GSMUA_Achr3P25620_001	Banana	cytosol	57.8	59.72
TraesCS5B01G394800.1	Wheat	cytosol	52.69	52.97
TraesCS5D01G399700.1	Wheat	cytosol	52.69	52.97
TraesCS5A01G389800.1	Wheat	cytosol	52.15	52.86
HORVU5Hr1G095150.2	Barley	cytosol	51.88	52.02
Zm00001d034028_P003	Maize	cytosol	51.61	51.47
OQU90987	Sorghum	cytosol	47.58	51.3
Os03t0750100-00	Rice	mitochondrion	34.95	36.83

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0051879	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1ACT9	EnsemblPlantsGene:PGSC0003DMG400007719
PGSC:PGSC0003DMG400007719	EnsemblPlants:PGSC0003DMT400019944	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF487
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002962B31

Description

Tetratricopeptide repeat (TPR)-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007719]

Coordinates

chr9:-:45956068..45964105

Molecular Weight (calculated)

41545.3 Da

IEP (calculated)

5.109

GRAVY (calculated)

-0.320

Length

372 amino acids

Sequence
(BLAST)

001: MALWMEAGSE PKTEKELADL DAISALKEST AFELKELGNE YVKKGKKHYS DAIDCYTRAI NQNALSDAEQ SILCSNRAHV NLLLGNYRRA LQDAEDAIKL
101: NPSNVKALYR AAKASVFLNL LAEAKGLCEK GLQHSSSNEE LKKLARHIDI QKSEMERRDA EVSKAVSSAK TIVSAFETRG LKIAKPMYQE LTGLRKPTLD
201: KNNILHWAVL LLYPEVMSSD FIEEFCETDM FSAHLDMISF LPHMFSEGCP PLPWDKENAY TRDAVELYYE ACAGVCLSKR DILQYLLEGT AASHVEDFGD
301: EESASALSST KGSISQEDVP GWVKINEKTT LYNVLKELSC VVPGLPVFWV VSRNSSFYKD FKSGNWSSPE LA

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.