Factsheet for Zm00001d034028_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90987	Sorghum	cytosol	88.2	95.36
TraesCS5B01G394800.1	Wheat	cytosol	75.07	75.68
TraesCS5D01G399700.1	Wheat	cytosol	73.99	74.59
TraesCS5A01G389800.1	Wheat	cytosol	73.19	74.39
HORVU5Hr1G095150.2	Barley	cytosol	71.31	71.7
GSMUA_Achr3P25620_001	Banana	cytosol	56.57	58.61
VIT_07s0005g04590.t01	Wine grape	cytosol	54.96	56.32
CDY10078	Canola	cytosol	54.69	56.04
Bra032529.1-P	Field mustard	cytosol	53.35	55.59
AT1G04130.1	Thale cress	cytosol	53.35	55.28
CDY32528	Canola	cytosol	53.89	53.46
Os03t0750100-00	Rice	mitochondrion	50.4	53.26
KRH19640	Soybean	cytosol	50.4	52.08
KRH32256	Soybean	cytosol	49.87	51.67
PGSC0003DMT400019944	Potato	cytosol	51.47	51.61
Solyc09g064380.2.1	Tomato	cytosol	15.82	46.09

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	UniProt:A0A1D6L4L5	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0051879	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	ProteinID:ONM09315.1
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF487	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000221CA7F	EnsemblPlantsGene:Zm00001d034028	EnsemblPlants:Zm00001d034028_P003
EnsemblPlants:Zm00001d034028_T003	SEG:seg	:	:	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr1:-:281461666..281464587

Molecular Weight (calculated)

41253.9 Da

IEP (calculated)

5.342

GRAVY (calculated)

-0.361

Length

373 amino acids

Sequence
(BLAST)

001: MALLMEPGAE PLTESEQADL AGIAAIKESA AREYKEQGNQ FVRMGRRHYA AAVSCYTKAI AQMEPLSSLD ASAAADASVL FANRAHVNIL LGNHRRALDD
101: AEQAIRLSPS SVKAYYRAVK AALALDLLTD AASFCRKGLE QDPPNEEFKK LLSEVDSKLR EQDRQRAKVA QAIAKAKDLA AAMGKRGVKL GKAAYQELTG
201: VKKPVLDEQG VLHWPVLLLY PEVMSSDFIE DFPDTDTFSP HLDVMFSETS PPLPWDDNHV YTRDSIELYY QGGFGKPLSR SEVLRYLLEG NVDSKALPDS
301: LLDGEDEEHD STKCTTVTST DSSSKWIKVK EGKTLQEVLQ DKGYIVPAIP VFFVVSRKST FYKDFKAGNW SLP

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.