CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032529.1-P	Field mustard	cytosol	91.76	93.3
CDY32528	Canola	cytosol	91.76	88.83
AT1G04130.1	Thale cress	cytosol	82.42	83.33
VIT_07s0005g04590.t01	Wine grape	cytosol	66.21	66.21
KRH19640	Soybean	cytosol	64.29	64.82
KRH32256	Soybean	cytosol	62.64	63.33
PGSC0003DMT400019944	Potato	cytosol	60.44	59.14
GSMUA_Achr3P25620_001	Banana	cytosol	57.14	57.78
Zm00001d034028_P003	Maize	cytosol	56.04	54.69
OQU90987	Sorghum	cytosol	51.37	54.2
TraesCS5B01G394800.1	Wheat	cytosol	54.95	54.05
HORVU5Hr1G095150.2	Barley	cytosol	54.4	53.37
TraesCS5D01G399700.1	Wheat	cytosol	53.85	52.97
TraesCS5A01G389800.1	Wheat	cytosol	53.3	52.86
Solyc09g064380.2.1	Tomato	cytosol	17.03	48.44
Os03t0750100-00	Rice	mitochondrion	35.16	36.26

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	UniProt:A0A078FDG5	EnsemblPlants:CDY10078	ProteinID:CDY10078	ProteinID:CDY10078.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00031878001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF487
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE0292
SEG:seg	:	:	:	:	:

Description

BnaC08g43730DBnaC08g43730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDG5]

Coordinates

chrLK032000:-:859784..861644

Molecular Weight (calculated)

40893.7 Da

IEP (calculated)

5.578

GRAVY (calculated)

-0.461

Length

364 amino acids

Sequence
(BLAST)

001: MALWMEVGSE PMTENEKADL IAITALKESA AIEFKEQGNE CVRKGKKHYS EAVENYTKAI DQRALSVSET SILFSNRAHV NLLLGNYRRA LTDAEEAIRL
101: CPDNVKAVYR AAKASVALDL LNEAKSYCEK GIEEDPGNED MKKLLKVVTL KKKEKEEHEA ELSRAVVEAK ACLSAFENRG VKIGKAMYRE LTGLKKPVLD
201: QNNILHWPVL LLYAEAMTSD FVEDFCETDI FLSLLSAPNM FSEDSPPLPW DKNHEYTREA IELYYEASSG TPLPRSRVLQ YLLEGTKGSQ AETTGDEDAN
301: LTKTPYNVKG RGSSGMVKVN ERRTLHDVLK EPNLVIPEIP VFYIVSKRSK FYKDFAAGKW SPPS

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.