CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034028_P003	Maize	cytosol	95.36	88.2
TraesCS5B01G394800.1	Wheat	cytosol	76.23	71.08
TraesCS5A01G389800.1	Wheat	cytosol	74.78	70.3
TraesCS5D01G399700.1	Wheat	cytosol	75.36	70.27
HORVU5Hr1G095150.2	Barley	cytosol	73.33	68.19
Os03t0750100-00	Rice	mitochondrion	56.81	55.52
GSMUA_Achr3P25620_001	Banana	cytosol	56.23	53.89
VIT_07s0005g04590.t01	Wine grape	cytosol	55.65	52.75
CDY10078	Canola	cytosol	54.2	51.37
Bra032529.1-P	Field mustard	cytosol	52.46	50.56
AT1G04130.1	Thale cress	cytosol	52.75	50.56
KRH19640	Soybean	cytosol	52.17	49.86
KRH32256	Soybean	cytosol	51.88	49.72
CDY32528	Canola	cytosol	53.62	49.2
PGSC0003DMT400019944	Potato	cytosol	51.3	47.58
Solyc09g064380.2.1	Tomato	cytosol	12.46	33.59

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	UniProt:A0A1Z5S4V8	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0051879	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:OQU90987
ProteinID:OQU90987	ProteinID:OQU90987.1	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF487
SMART:SM00028	EnsemblPlantsGene:SORBI_3001G088500	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0003C662BD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:6881365..6884120

Molecular Weight (calculated)

37924.2 Da

IEP (calculated)

5.758

GRAVY (calculated)

-0.321

Length

345 amino acids

Sequence
(BLAST)

001: MALLMEPGAE PLTESEQADL AGIAAIKESA AREFKEQGNQ FVRMGRKHYA EAVSCYTKAI AQMEPLSSLD ASAAADASVL FANRAHVNLL LGNHRRALDD
101: AEQAIRLSPS SVKAYYRAVK AALALDLLTD AASFCRKGLE QDPANEEFKK LLSEVDAKLR EQDRQRAKVA QAITKAKDLA AAMEKRGVKL GKAAYQELTG
201: VKKPKLDEQG VLHWPVLLLY PEVMSSDFIE DFPDTDTFLP HLDGGFGKPL SKSEVLRYLL EGTVDLKALP DSLLDGEDEE HDSSKCSTVT STDGSSKWIK
301: VKEGKTLQEV LQDKGYIVPA IPVFFVVSRK STFYKDFKAG NWSLP

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.