Factsheet for AT1G04130.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032529.1-P	Field mustard	cytosol	83.61	84.08
CDY32528	Canola	cytosol	86.11	82.45
CDY10078	Canola	cytosol	83.33	82.42
VIT_07s0005g04590.t01	Wine grape	cytosol	64.72	64.01
KRH19640	Soybean	cytosol	64.17	63.99
KRH32256	Soybean	cytosol	62.5	62.5
PGSC0003DMT400019944	Potato	cytosol	61.67	59.68
GSMUA_Achr3P25620_001	Banana	cytosol	56.11	56.11
TraesCS5B01G394800.1	Wheat	cytosol	55.28	53.78
Zm00001d034028_P003	Maize	cytosol	55.28	53.35
OQU90987	Sorghum	cytosol	50.56	52.75
TraesCS5A01G389800.1	Wheat	cytosol	53.61	52.59
HORVU5Hr1G095150.2	Barley	cytosol	53.89	52.29
TraesCS5D01G399700.1	Wheat	cytosol	53.61	52.16
Solyc09g064380.2.1	Tomato	cytosol	16.94	47.66
Os03t0750100-00	Rice	mitochondrion	36.67	37.39

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	EntrezGene:839276	ProteinID:AEE27660.1	ProteinID:ANM58020.1	ArrayExpress:AT1G04130
EnsemblPlantsGene:AT1G04130	RefSeq:AT1G04130	TAIR:AT1G04130	RefSeq:AT1G04130-TAIR-G	EnsemblPlants:AT1G04130.1	TAIR:AT1G04130.1
EMBL:AY054170	EMBL:AY066037	ncoils:Coil	UniProt:F4I456	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0051879	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	RefSeq:NP_001320488.1	RefSeq:NP_563702.1	PFAM:PF13181	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50293
PANTHER:PTHR22904	PANTHER:PTHR22904:SF487	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
Symbol:TPR2	InterPro:TPR_repeat	UniParc:UPI0000162C45	:	:	:

Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]

Coordinates

chr1:+:1073274..1075568

Molecular Weight (calculated)

40512.1 Da

IEP (calculated)

5.977

GRAVY (calculated)

-0.567

Length

360 amino acids

Sequence
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.