Factsheet for TraesCS5B01G394800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G389800.1	Wheat	cytosol	95.41	96.19
TraesCS5D01G399700.1	Wheat	cytosol	94.86	94.86
HORVU5Hr1G095150.2	Barley	cytosol	92.97	92.72
OQU90987	Sorghum	cytosol	71.08	76.23
Zm00001d034028_P003	Maize	cytosol	75.68	75.07
GSMUA_Achr3P25620_001	Banana	cytosol	58.92	60.56
VIT_07s0005g04590.t01	Wine grape	cytosol	57.3	58.24
Os03t0750100-00	Rice	mitochondrion	54.59	57.22
Bra032529.1-P	Field mustard	cytosol	53.51	55.31
AT1G04130.1	Thale cress	cytosol	53.78	55.28
CDY10078	Canola	cytosol	54.05	54.95
KRH19640	Soybean	cytosol	53.24	54.57
KRH32256	Soybean	cytosol	52.16	53.61
CDY32528	Canola	cytosol	54.05	53.19
PGSC0003DMT400019944	Potato	cytosol	52.97	52.69
Solyc09g064380.2.1	Tomato	cytosol	15.95	46.09

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF487
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS5B01G394800
EnsemblPlants:TraesCS5B01G394800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:572391693..572394555

Molecular Weight (calculated)

40803.2 Da

IEP (calculated)

5.501

GRAVY (calculated)

-0.455

Length

370 amino acids

Sequence
(BLAST)

001: MALLMEPGSE PLTEDEKADL DGIAAIKESA AREYREEGNQ FVKKGRKHYP DAVDCYTKAI AQMGAPSAPN PDASVLFANR AHVNLLLGNH RRALDDAEEA
101: VRLSPSNLKA HYRAAKAALA LDLLPQAASF CRRGLEQDPA NEELKKFLAQ VEAQQRERDL KRAKVAQAIS AAKDLAAAIE KRGLRLGKAA YQELTGVKKP
201: KLDEQGVLHW PVLLLYPEVM SSDFIEDFPE TDMFSEHLDL MFSESSPPLP WDENHAYTRD AIELYCQAGD GTPFSRSELL KYLLEGTVDS GSLPESLDGE
301: DGEHGTVKGS TAISSSQGSS SKWIKVREGK TLQEALQHKD YIIPAVPVFF VVSRKSAFYS KFKAGNWSLP

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.