Factsheet for TraesCS5D01G399700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G389800.1	Wheat	cytosol	94.59	95.37
TraesCS5B01G394800.1	Wheat	cytosol	94.86	94.86
HORVU5Hr1G095150.2	Barley	cytosol	92.16	91.91
OQU90987	Sorghum	cytosol	70.27	75.36
Zm00001d034028_P003	Maize	cytosol	74.59	73.99
GSMUA_Achr3P25620_001	Banana	cytosol	58.38	60.0
VIT_07s0005g04590.t01	Wine grape	cytosol	56.49	57.42
Os03t0750100-00	Rice	mitochondrion	52.97	55.52
KRH19640	Soybean	cytosol	52.97	54.29
Bra032529.1-P	Field mustard	cytosol	52.16	53.91
CDY10078	Canola	cytosol	52.97	53.85
AT1G04130.1	Thale cress	cytosol	52.16	53.61
KRH32256	Soybean	cytosol	52.16	53.61
PGSC0003DMT400019944	Potato	cytosol	52.97	52.69
CDY32528	Canola	cytosol	52.7	51.86
Solyc09g064380.2.1	Tomato	cytosol	15.95	46.09

Protein Annotations

EnsemblPlants:TraesCS5D01G399700.1	EnsemblPlantsGene:TraesCS5D01G399700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
PANTHER:PTHR22904	PANTHER:PTHR22904:SF487	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	SEG:seg
SMART:SM00028	SUPFAM:SSF48452	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5D:-:465034456..465038812

Molecular Weight (calculated)

40626.1 Da

IEP (calculated)

5.840

GRAVY (calculated)

-0.383

Length

370 amino acids

Sequence
(BLAST)

001: MALLMEPGSE PLTEGEKADL AAIAAIKESA AREYREEGNQ FVKKGRKHYP DAVDCYTKAI AQMGALAAPN PDASVLFANR AHVNLLLGNH RRALDDAEQA
101: VRLSPSNLKA HYRAAKAALA LDQLPQAASF CRRGLEHDPA NEELKKFLAQ VEAQQRERDL KRAKVAQAIS AAKDLAAAIE KRGLRLGKAA YQELTGVKKP
201: TLDEQGVLHW PVLLLYPEVM SSDFIEDFPE TDLFSDHLDV MFSASSPPLP WDENHAYTRD AIELYCQAGD GTPFSKSELL KYLLEGTVDS GLLPESLDGE
301: DGEHGTVEGS TAISPSQGSS SKWIKIREGK PLQEALQHKD YIIPAVPVFF VVSRKSAFYS KFKAGNWSLP

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.