Factsheet for Bra032529.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10078	Canola	cytosol	93.3	91.76
CDY32528	Canola	cytosol	93.85	89.36
AT1G04130.1	Thale cress	cytosol	84.08	83.61
VIT_07s0005g04590.t01	Wine grape	cytosol	68.44	67.31
KRH19640	Soybean	cytosol	65.36	64.82
KRH32256	Soybean	cytosol	63.69	63.33
GSMUA_Achr3P25620_001	Banana	cytosol	60.34	60.0
PGSC0003DMT400019944	Potato	cytosol	61.73	59.41
TraesCS5B01G394800.1	Wheat	cytosol	55.31	53.51
Zm00001d034028_P003	Maize	cytosol	55.59	53.35
HORVU5Hr1G095150.2	Barley	cytosol	54.75	52.83
OQU90987	Sorghum	cytosol	50.56	52.46
TraesCS5A01G389800.1	Wheat	cytosol	53.63	52.32
TraesCS5D01G399700.1	Wheat	cytosol	53.91	52.16
Solyc09g064380.2.1	Tomato	cytosol	17.32	48.44
Os03t0750100-00	Rice	mitochondrion	35.2	35.69

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	EnsemblPlantsGene:Bra032529	EnsemblPlants:Bra032529.1	EnsemblPlants:Bra032529.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0051879	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M4EUP7	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF487	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002543682	SEG:seg

Description

AT1G04130 (E=6e-153) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA09:-:36465749..36467389

Molecular Weight (calculated)

40125.8 Da

IEP (calculated)

5.793

GRAVY (calculated)

-0.512

Length

358 amino acids

Sequence
(BLAST)

001: MALWMEAGSE PMTENEKADL IAITALKESA AIEFKEQGNE CVKKGKKHYS EAIENYTKAI NQGVLSDSET SILFSNRAHV NLLLGNYRRA LTDAEEAIRL
101: CSDNVKAVYR AAKASLSLDL LSEAKSYCEK GIEKDPSNED MKKLLKVVTL KKKEKEEHEA EVSRAVVEAK ACLSAFENRG VKIGKAMYRE LTGLKKPVLD
201: QNNILHWPVL LLYAEAMTSD FVEDFCETDI APNMFSEDSP PLPWDKNHEY TREAIELYYE AGSGTPLPRS RVLQYLLEGT KGSQAETTGD EDTSLPKTPY
301: NVKGKGSSGM VKVNERRTLH DVLKEPNLVI PEIPVFYIVS KRTRFYKDFA AGKWSPPS

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.