Factsheet for VIT_07s0005g04590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19640	Soybean	cytosol	70.6	71.19
KRH32256	Soybean	cytosol	69.51	70.28
Bra032529.1-P	Field mustard	cytosol	67.31	68.44
PGSC0003DMT400019944	Potato	cytosol	68.41	66.94
CDY10078	Canola	cytosol	66.21	66.21
CDY32528	Canola	cytosol	67.58	65.43
GSMUA_Achr3P25620_001	Banana	cytosol	64.29	65.0
AT1G04130.1	Thale cress	cytosol	64.01	64.72
Solyc09g064380.2.1	Tomato	cytosol	21.7	61.72
HORVU5Hr1G095150.2	Barley	cytosol	58.79	57.68
TraesCS5B01G394800.1	Wheat	cytosol	58.24	57.3
TraesCS5A01G389800.1	Wheat	cytosol	57.69	57.22
TraesCS5D01G399700.1	Wheat	cytosol	57.42	56.49
OQU90987	Sorghum	cytosol	52.75	55.65
Zm00001d034028_P003	Maize	cytosol	56.32	54.96
Os03t0750100-00	Rice	mitochondrion	37.91	39.09

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100253278	wikigene:100253278	MapMan:35.2	ProteinID:CBI37210	ProteinID:CBI37210.3
ncoils:Coil	UniProt:D7U393	EMBL:FN596502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0051879	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100253278	wikigene:LOC100253278
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF487	SMART:SM00028	SUPFAM:SSF48452
TIGR:TC53489	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00015CA505	ArrayExpress:VIT_07s0005g04590
EnsemblPlantsGene:VIT_07s0005g04590	EnsemblPlants:VIT_07s0005g04590.t01	unigene:Vvi.17521	RefSeq:XP_002269637	RefSeq:XP_002269637.1	:

Description

No Description!

Coordinates

chr7:+:7787498..7797068

Molecular Weight (calculated)

40731.4 Da

IEP (calculated)

5.347

GRAVY (calculated)

-0.359

Length

364 amino acids

Sequence
(BLAST)

001: MALWMETGSE PNTQSEIADL DAITALKESA ALELKEKGNQ YVKLGKKHYA DAIDCYTKAI NQKALSDPEN SVIYANRAHV NLLLGNYRRA LMDAQEAIKL
101: CPTNVKAFYR AVKASLSLDL LGEAKSYCEN GLERDPNNEE LKKLARQIDA QNSEREHHEA QVSKAVATAK HLVSAIENRG LKIGKAVFQE LTGLRKPILD
201: TNNILHWPVL LLYAEVMSSD FIEDFCETDI FSAHLDIMFS ESCPPLPWDK ENNYTREAVE LYYEAGSGVC LPKAKFLSYL LEGTVGSHVE SIGDEEKDVI
301: ECSLDVTSAG KGSSKWVKVN EKRTLNDVLK EPNLMIPGIP VFYVVSKRSS FYKEFRDGKW SLPS

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.