Factsheet for GSMUA_Achr3P25620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g04590.t01	Wine grape	cytosol	65.0	64.29
KRH19640	Soybean	cytosol	62.5	62.33
KRH32256	Soybean	cytosol	61.94	61.94
Bra032529.1-P	Field mustard	cytosol	60.0	60.34
TraesCS5B01G394800.1	Wheat	cytosol	60.56	58.92
TraesCS5D01G399700.1	Wheat	cytosol	60.0	58.38
TraesCS5A01G389800.1	Wheat	cytosol	59.44	58.31
HORVU5Hr1G095150.2	Barley	cytosol	59.72	57.95
PGSC0003DMT400019944	Potato	cytosol	59.72	57.8
CDY10078	Canola	cytosol	57.78	57.14
Zm00001d034028_P003	Maize	cytosol	58.61	56.57
OQU90987	Sorghum	cytosol	53.89	56.23
AT1G04130.1	Thale cress	cytosol	56.11	56.11
CDY32528	Canola	cytosol	58.06	55.59
Solyc09g064380.2.1	Tomato	cytosol	16.94	47.66
Os03t0750100-00	Rice	mitochondrion	38.89	39.66

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0051879	EnsemblPlantsGene:GSMUA_Achr3G25620_001	EnsemblPlants:GSMUA_Achr3P25620_001	EnsemblPlants:GSMUA_Achr3T25620_001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M0SHS8	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF487	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00029503F9	SEG:seg

Description

Putative Tetratricopeptide repeat protein 4 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr3G25620_001]

Coordinates

chr3:-:25737966..25743422

Molecular Weight (calculated)

40683.4 Da

IEP (calculated)

5.703

GRAVY (calculated)

-0.364

Length

360 amino acids

Sequence
(BLAST)

001: MALWMDAGSD PISESEKADL EAIAAIKEAA AVELKEQGNQ FVKMGKKHYN DAIDCYTRAI NQKALSDSDH SVLFANRAHV NLLLGNYRRA LSDSEEAIKF
101: CSTNIKAYYR AAKAAFSLNL LAEAASLCQR GLEQVPSNDE LKKLLMQIDL RRKEDEHQKA QVLQAVASAK ELSSAMENRG LKLGKGLYQE LTGIRKPVLD
201: KSGILHWPVL LLYAEVMSSD FIEDFCETDI FRNMFSEDSQ PLPWDEYHAY TREAVELYYQ AGTGILLSNK EVLKYLLDGT VKSVPEGFFD EEKDSGKDLD
301: SSVSHLSTNY GKWIHINEKK TLLDILRRSD YIIPAIPVFF VVSKKSEFYK EFRAGKWSPP

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.