CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32256	Soybean	cytosol	92.8	93.06
VIT_07s0005g04590.t01	Wine grape	cytosol	71.19	70.6
Bra032529.1-P	Field mustard	cytosol	64.82	65.36
CDY10078	Canola	cytosol	64.82	64.29
AT1G04130.1	Thale cress	cytosol	63.99	64.17
CDY32528	Canola	cytosol	66.2	63.56
GSMUA_Achr3P25620_001	Banana	cytosol	62.33	62.5
PGSC0003DMT400019944	Potato	cytosol	63.99	62.1
TraesCS5B01G394800.1	Wheat	cytosol	54.57	53.24
TraesCS5A01G389800.1	Wheat	cytosol	54.02	53.13
TraesCS5D01G399700.1	Wheat	cytosol	54.29	52.97
HORVU5Hr1G095150.2	Barley	cytosol	54.02	52.56
OQU90987	Sorghum	cytosol	49.86	52.17
Zm00001d034028_P003	Maize	cytosol	52.08	50.4
Solyc09g064380.2.1	Tomato	cytosol	17.45	49.22
Os03t0750100-00	Rice	mitochondrion	37.4	38.24

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100783179	MapMan:35.2	UniProt:A0A0R0GVZ2	EMBL:ACUP02008195	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G127800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EnsemblPlants:KRH19640	ProteinID:KRH19640	ProteinID:KRH19640.1	PFAM:PF13181	PFscan:PS50293
PANTHER:PTHR22904	PANTHER:PTHR22904:SF487	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0003DE93C1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:24081918..24086719

Molecular Weight (calculated)

41000.2 Da

IEP (calculated)

6.436

GRAVY (calculated)

-0.420

Length

361 amino acids

Sequence
(BLAST)

001: MALWMEKGSE PLTETEKADL EAIAALKESA AFEFKEKGNQ YVKMGKKHYS DAIDYYTRAI DQKALSDSET SILFANRAHV NLLLGNLRRA LTDSNEALKL
101: CPSNIKAIYR AAKASLSLNM LAEAREYCLK GLQFDPNNED LKKLDRQIGL KISEKEKHEA EASKAVAETK KLVSAIENRG LKIGKAMYLE LTGLRKPVLD
201: KSNILHWPVL LLYAEVMSSD FIEDFCETDM FSVHLDMIFS EDQPLSWDVE NNYKREFIEL YYEQTGSGLC LSKEKLLHCL LEGTAAAHRE GVGDEEKDTV
301: EDYKQHMGSP KWIKVNERRT LHDVLKEPNF IIPGIPVFYV VSKRSSFYGK FKAGKWAPPS I

Best Arabidopsis Sequence Match ( AT1G04130.1 )
(BLAST)

001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN

Arabidopsis Description

TPR2Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I456]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.