Factsheet for TraesCS7D01G001600.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
plastid 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, endoplasmic reticulum, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G120800.1
TraesCS1A01G339600.1
TraesCS1B01G140100.1
TraesCS1B01G351900.1
TraesCS1D01G121600.1
TraesCS1D01G341600.1
TraesCS3A01G274000.1
TraesCS3A01G313600.1
TraesCS3B01G158300.1
TraesCS3B01G307700.2
TraesCS3D01G140700.1
TraesCS3D01G273200.1
TraesCS4A01G498700.1
TraesCS5A01G389800.1
TraesCS5B01G394800.1
TraesCS5D01G399700.1
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1
TraesCS7A01G001900.1
TraesCS7D01G001600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	TraesCS5A01G389800.1	AT1G04130.1	21798944
AT3G54850.1	TraesCS5B01G394800.1	AT1G04130.1	21798944
AT3G54850.1	TraesCS5D01G399700.1	AT1G04130.1	21798944
AT3G54850.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT3G54850.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT3G54850.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT3G54850.1	TraesCS4A01G498700.1	AT3G54850.1	21798944
AT3G54850.1	TraesCS7A01G001900.1	AT3G54850.1	21798944
AT3G54850.1	TraesCS7D01G001600.2	AT3G54850.1	21798944
AT3G54850.1	TraesCS1A01G120800.1	AT4G39470.1	21798944
AT3G54850.1	TraesCS1B01G140100.1	AT4G39470.1	21798944
AT3G54850.1	TraesCS1D01G121600.1	AT4G39470.1	21798944
AT3G54850.1	TraesCS1A01G339600.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS1B01G351900.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS1D01G341600.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3A01G274000.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3A01G313600.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3B01G158300.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3B01G307700.2	AT5G58950.1	21798944
AT3G54850.1	TraesCS3D01G140700.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3D01G273200.1	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G001900.1	Wheat	cytosol	86.88	98.68
HORVU7Hr1G000780.1	Barley	cytosol	94.35	96.27
TraesCS4A01G498700.1	Wheat	plastid	96.68	91.94
Os06t0102700-01	Rice	plasma membrane	83.89	83.61
EER87680	Sorghum	cytosol	81.89	82.03
Zm00001d045632_P004	Maize	cytosol, mitochondrion	81.73	78.1
KRH04403	Soybean	mitochondrion	38.54	64.09
VIT_13s0019g04710.t01	Wine grape	cytosol	63.12	60.51
PGSC0003DMT400019235	Potato	cytosol	60.8	58.65
Solyc11g008390.1.1	Tomato	cytosol	60.3	58.17
KRH34817	Soybean	cytosol	60.3	57.44
KRG91959	Soybean	cytosol	59.97	57.21
GSMUA_Achr3P00280_001	Banana	cytosol	56.81	56.72
AT3G54850.1	Thale cress	cytosol	57.64	54.91
Bra007105.1-P	Field mustard	cytosol	57.64	54.73
CDX78273	Canola	cytosol	57.31	54.42
GSMUA_Achr1P24290_001	Banana	cytosol	54.15	53.36
TraesCS5D01G093700.1	Wheat	cytosol	53.16	46.78
TraesCS6D01G274500.1	Wheat	cytosol	42.86	40.25
TraesCS4D01G207700.2	Wheat	plastid	50.66	39.25
CDX73439	Canola	plastid	57.64	38.51
TraesCS7D01G289800.1	Wheat	cytosol	40.53	37.89
TraesCS7D01G536300.1	Wheat	cytosol	39.87	37.21
TraesCS2D01G194400.1	Wheat	cytosol	20.6	34.35
TraesCS2D01G275400.1	Wheat	nucleus	24.25	31.74
TraesCS3D01G382500.1	Wheat	cytosol	22.92	31.22
TraesCS2D01G197200.1	Wheat	plastid	21.1	27.67
TraesCS6D01G180400.1	Wheat	plastid	32.39	26.9
TraesCS1D01G299400.1	Wheat	cytosol, plastid	29.4	26.54
TraesCS3D01G527900.1	Wheat	cytosol	35.71	25.87
TraesCS3D01G339600.1	Wheat	plastid	29.07	25.4
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	28.24	24.67
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	26.25	22.54

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005102	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0070696	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF111
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7D01G001600	EnsemblPlants:TraesCS7D01G001600.2
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:

Description

No Description!

Coordinates

chr7D:+:1320221..1322307

Molecular Weight (calculated)

64666.7 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.178

Length

602 amino acids

Sequence
(BLAST)

001: MAAATAAAEI AALPEPRGPL RRLCGDLSRR VRLLAPLLDD PSASASPPLA DALRAARDLL HSVHHGSKIY QAMRGRDSLL REFAAVNERI QAALDDLPYN
101: DFDMPEEVQE QVALVHSQFK RAATRAEPAD AQLARDLAWA LSDDKPTVPA LLMRVSEKLQ LETMADMKRE SVALHEMVIS SGGEPDGCVD EMSSLLKKLK
201: DCVIAQAPSA EAPGVGRSPS VKSPIIPDEF RCPISLELMQ DPVIVSSGQT YERSCIQKWL DSGHKTCPKT QLALTHTSLT PNFVLKSLIA QWCEANGIEL
301: PKNKANSHDK KAVKSSDYDN AGLVSLMNRL RGGNQDEQRA AAGEIRLLAK RNVNNRICIA EAGAIPLLVN LLSSSDPRTQ EHAVTALLNL SIHENNKASI
401: VDSNAIPKIV EVLKTGSMEA RENAAATLFS LSVVDENKVT IGAAGAIPPL INLLCDGSPR GKKDAATAIF NLCIYQGNKV RAVKAGIITH LMNFLVDPTG
501: GMIDEALTLL SILAGNQEGK SVITQSEPMP PLVEVIKTGS PRNRENAAAI LWSLCSADAE QTLAAKAAGG EDALKELSET GTDRAKRKAS SLLELMRQSE
601: EA

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.