Factsheet for Bra007105.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002606.1-P
Bra003986.1-P
Bra004407.1-P
Bra006738.1-P
Bra007105.1-P
Bra007875.1-P
Bra010501.1-P
Bra011662.1-P
Bra017747.1-P
Bra018081.1-P
Bra020343.1-P
Bra032529.1-P
Bra033620.1-P
Bra033769.1-P
Bra038128.1-P
Bra039676.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	Bra032529.1-P	AT1G04130.1	21798944
AT3G54850.1	Bra038128.1-P	AT1G53510.1	21798944
AT3G54850.1	Bra039676.1-P	AT1G53510.1	21798944
AT3G54850.1	Bra003986.1-P	AT1G69690.1	21798944
AT3G54850.1	Bra004407.1-P	AT1G69690.1	21798944
AT3G54850.1	Bra007875.1-P	AT1G69690.1	21798944
AT3G54850.1	Bra018081.1-P	AT3G48150.1	21798944
AT3G54850.1	Bra033769.1-P	AT3G48150.1	21798944
AT3G54850.1	Bra007105.1-P	AT3G54850.1	21798944
AT3G54850.1	Bra010501.1-P	AT4G36110.1	21798944
AT3G54850.1	Bra011662.1-P	AT4G36110.1	21798944
AT3G54850.1	Bra017747.1-P	AT4G36110.1	21798944
AT3G54850.1	Bra033620.1-P	AT4G39470.1	21798944
AT3G54850.1	Bra002606.1-P	AT5G58950.1	21798944
AT3G54850.1	Bra006738.1-P	AT5G58950.1	21798944
AT3G54850.1	Bra020343.1-P	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78273	Canola	cytosol	99.37	99.37
AT3G54850.1	Thale cress	cytosol	87.7	87.97
KRH04403	Soybean	mitochondrion	40.69	71.27
Solyc11g008390.1.1	Tomato	cytosol	64.67	65.71
VIT_13s0019g04710.t01	Wine grape	cytosol	64.98	65.61
PGSC0003DMT400019235	Potato	cytosol	64.51	65.54
KRG91959	Soybean	cytosol	64.67	64.98
KRH34817	Soybean	cytosol	64.2	64.4
TraesCS7A01G001900.1	Wheat	cytosol	51.26	61.32
HORVU7Hr1G000780.1	Barley	cytosol	54.42	58.47
EER87680	Sorghum	cytosol	55.05	58.07
TraesCS7D01G001600.2	Wheat	cytosol, plastid	54.73	57.64
Os06t0102700-01	Rice	plasma membrane	54.42	57.12
GSMUA_Achr3P00280_001	Banana	cytosol	52.68	55.39
Zm00001d045632_P004	Maize	cytosol, mitochondrion	54.73	55.08
TraesCS4A01G498700.1	Wheat	plastid	54.1	54.19
GSMUA_Achr1P24290_001	Banana	cytosol	50.32	52.21
Bra018212.1-P	Field mustard	cytosol	51.26	49.92
Bra033820.1-P	Field mustard	cytosol	51.26	49.39
Bra035665.1-P	Field mustard	cytosol	48.11	46.78
Bra040513.1-P	Field mustard	cytosol	18.3	44.11
Bra012355.1-P	Field mustard	plasma membrane	40.22	43.37
Bra024559.1-P	Field mustard	cytosol, plasma membrane	40.54	42.2
Bra016165.1-P	Field mustard	cytosol, plasma membrane	40.06	41.23
Bra027977.1-P	Field mustard	cytosol	40.06	38.96
Bra001006.1-P	Field mustard	plastid	20.19	36.16
Bra040374.1-P	Field mustard	cytosol	25.24	35.48
Bra001247.1-P	Field mustard	cytosol	25.24	35.09
Bra029642.1-P	Field mustard	cytosol	25.55	35.06
Bra020360.1-P	Field mustard	cytosol	19.4	34.84
Bra010834.1-P	Field mustard	mitochondrion	35.17	31.02
Bra032309.1-P	Field mustard	plastid	34.38	30.97
Bra012713.1-P	Field mustard	cytosol	21.29	29.67
Bra038470.1-P	Field mustard	plastid	21.77	29.49
Bra007097.1-P	Field mustard	cytosol	32.65	29.49
Bra037117.1-P	Field mustard	cytosol, plastid	34.07	29.43
Bra021899.1-P	Field mustard	plastid	30.28	29.05
Bra014787.1-P	Field mustard	cytosol	33.6	28.86
Bra001998.1-P	Field mustard	cytosol	26.81	28.48
Bra012155.1-P	Field mustard	cytosol	29.18	28.07
Bra032180.1-P	Field mustard	cytosol	25.39	27.57
Bra019022.1-P	Field mustard	cytosol	28.55	26.85
Bra006451.1-P	Field mustard	cytosol	19.09	25.91
Bra019924.1-P	Field mustard	mitochondrion	23.5	21.44
Bra031521.1-P	Field mustard	cytosol	22.56	21.12
Bra002153.1-P	Field mustard	cytosol	23.5	10.91
Bra006452.1-P	Field mustard	cytosol	19.24	7.34

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra007105	EnsemblPlants:Bra007105.1	EnsemblPlants:Bra007105.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005102	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0070696	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4CSB3	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF111	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000254299A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT3G54850 (E=7e-299) ATPUB14, PUB14 | PUB14; ubiquitin-protein ligase

Coordinates

chrA09:+:27346477..27349151

Molecular Weight (calculated)

69184.5 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.184

Length

634 amino acids

Sequence
(BLAST)

001: MGSTNGSDEE LMSRLVDSVK QISKFSNSKG FFGRIQGDLV RRITLLSPFF EELIDINAEL NEEQQLTGFE VMRIALDSSL ELFRSVNGGS KLLQIVHRGS
101: IMQKFHDVTV EIEAALTQIP YDHFEVSEEV IEQVKLLHSQ FKRATERQED YDLQLSHDLA VAESVVDPDP ETLKRLSQEL QLSTIDELKK ESHAIHEYFL
201: SYEGDPDDCF QRMSSLLKKL VDCASTESSE PDASTGSKVI SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHSG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSSY RTTRPGGGSS SSDCDRAFVL ALLEKLANGS TEQQRAAAGE LRLLAKRNAD NRVCIAEAGA IPLLVELLSS
401: PDPRTQEHSV TALLNLSINE GNKGAIVDAG AITDIVEVLK NGSMEARENA AATLFSLSVV DENKVAIGAA GAIQALISLL EEGTRRGKKD AATAIFNLCI
501: YQGNKSRAIK GGIVDPLTRL LKDAGGGMVD EALAILAILS TNQEGKAAIG EADTIPVLVE IIRTGSPRNR ENAAAILWYL CIGNMERLNV AREVGADVAL
601: KELTENGTDR AKRKAASLLE IIQQLEGVVI STVP

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.