Factsheet for Bra033769.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra001497.1-P
Bra001585.1-P
Bra001592.1-P
Bra003510.1-P
Bra003900.1-P
Bra003902.1-P
Bra004515.1-P
Bra004677.1-P
Bra007701.1-P
Bra008000.1-P
Bra008305.1-P
Bra008613.1-P
Bra010501.1-P
Bra011558.1-P
Bra011662.1-P
Bra013534.1-P
Bra013838.1-P
Bra014221.1-P
Bra015169.1-P
Bra015512.1-P
Bra015670.1-P
Bra016094.1-P
Bra017091.1-P
Bra017747.1-P
Bra020695.1-P
Bra023570.1-P
Bra025616.1-P
Bra026151.1-P
Bra026775.1-P
Bra028905.1-P
Bra032414.1-P
Bra034691.1-P
Bra035062.1-P
Bra036167.1-P
Bra036240.1-P
Bra037247.1-P
Bra037483.1-P
Bra039264.1-P
Bra039384.1-P
Bra039652.1-P
Bra040872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48150.1	Bra036240.1-P	AT1G03130.1	21798944
AT3G48150.1	Bra015512.1-P	AT1G06590.1	20706207
AT3G48150.1	Bra032414.1-P	AT1G06590.1	20706207
AT3G48150.1	Bra026151.1-P	AT1G15260.1	21798944
AT3G48150.1	Bra026775.1-P	AT1G15260.1	21798944
AT3G48150.1	Bra014221.1-P	AT1G49850.1	21798944
AT3G48150.1	Bra039652.1-P	AT1G49850.1	21798944
AT3G48150.1	Bra003902.1-P	AT1G71970.1	21798944
AT3G48150.1	Bra008000.1-P	AT1G71970.1	21798944
AT3G48150.1	Bra016094.1-P	AT1G71970.1	21798944
AT3G48150.1	Bra003900.1-P	AT1G72030.1	21798944
AT3G48150.1	Bra008305.1-P	AT1G77400.1	21798944
AT3G48150.1	Bra015670.1-P	AT1G77400.1	21798944
AT3G48150.1	Bra035062.1-P	AT1G78770.1	20706207
AT3G48150.1	Bra025616.1-P	AT2G04660.1	14508008
AT3G48150.1	Bra028905.1-P	AT2G04660.1	14508008
AT3G48150.1	Bra015169.1-P	AT2G05830.1	20706207
AT3G48150.1	Bra037247.1-P	AT2G17880.1	21798944
AT3G48150.1	Bra040872.1-P	AT2G17880.1	21798944
AT3G48150.1	Bra017091.1-P	AT2G39100.1	21798944
AT3G48150.1	Bra004677.1-P	AT2G42260.1	20706207
AT3G48150.1	Bra000304.1-P	AT2G43370.1	21798944
AT3G48150.1	Bra004515.1-P	AT2G46690.1	21798944
AT3G48150.1	Bra039264.1-P	AT2G46690.1	21798944
AT3G48150.1	Bra001497.1-P	AT3G13310.1	21798944
AT3G48150.1	Bra034691.1-P	AT3G13310.1	21798944
AT3G48150.1	Bra039384.1-P	AT3G13310.1	21798944
AT3G48150.1	Bra001585.1-P	AT3G15160.1	21798944
AT3G48150.1	Bra001592.1-P	AT3G15360.1	21798944
AT3G48150.1	Bra003510.1-P	AT3G62790.1	21798944
AT3G48150.1	Bra007701.1-P	AT3G62790.1	21798944
AT3G48150.1	Bra013534.1-P	AT4G21530.1	20706207
AT3G48150.1	Bra013838.1-P	AT4G24820.1	20706207
AT3G48150.1	Bra011558.1-P	AT4G34740.1	21798944
AT3G48150.1	Bra010501.1-P	AT4G36110.1	21798944
AT3G48150.1	Bra011662.1-P	AT4G36110.1	21798944
AT3G48150.1	Bra017747.1-P	AT4G36110.1	21798944
AT3G48150.1	Bra008613.1-P	AT5G16560.1	21798944
AT3G48150.1	Bra023570.1-P	AT5G16560.1	21798944
AT3G48150.1	Bra020695.1-P	AT5G48500.1	21798944
AT3G48150.1	Bra036167.1-P	AT5G48500.1	21798944
AT3G48150.1	Bra037483.1-P	AT5G48500.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58070	Canola	cytosol	85.29	99.6
CDY70805	Canola	nucleus	49.31	94.68
Bra018081.1-P	Field mustard	cytosol	92.04	91.88
AT3G48150.1	Thale cress	cytosol	90.83	90.67
CDY58069	Canola	nucleus	65.74	85.2
VIT_07s0130g00490.t01	Wine grape	cytosol	79.07	79.2
PGSC0003DMT400063189	Potato	cytosol	73.36	77.94
VIT_07s0031g02330.t01	Wine grape	cytosol	77.68	77.82
Solyc03g113740.2.1	Tomato	cytosol, mitochondrion	77.34	77.6
KRH27971	Soybean	nucleus	75.95	76.08
KRH77487	Soybean	nucleus	75.09	75.09
KRH24006	Soybean	cytosol	74.22	72.84
GSMUA_Achr11P...	Banana	cytosol	68.51	65.56
EES07517	Sorghum	cytosol	66.78	64.33
TraesCS6A01G251400.1	Wheat	cytosol	65.92	63.61
TraesCS6B01G273900.1	Wheat	cytosol	65.92	63.61
TraesCS6D01G233200.1	Wheat	cytosol	65.92	63.61
Zm00001d017475_P002	Maize	cytosol	65.74	63.44
Os02t0656300-01	Rice	cytosol	65.4	63.32
HORVU6Hr1G062870.1	Barley	cytosol, plastid	65.92	58.71
HORVU0Hr1G027080.4	Barley	plastid	60.38	58.17
KRH29310	Soybean	cytosol	31.66	57.19
Os06t0679100-00	Rice	plastid	16.09	52.25
Bra039034.1-P	Field mustard	cytosol	18.69	14.54
Bra027173.1-P	Field mustard	cytosol	18.17	13.38

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.4	InterPro:APC8	EnsemblPlantsGene:Bra033769	EnsemblPlants:Bra033769.1	EnsemblPlants:Bra033769.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005680	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0030071	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4EY78
PFAM:PF04049	PFAM:PF13176	PFAM:PF13181	PFAM:PF13414	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR12558	PANTHER:PTHR12558:SF10	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0002543D70	SEG:seg	:	:	:

Description

AT3G48150 (E=1e-293) APC8, CDC23 | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding

Coordinates

chrA01:-:14413882..14416057

Molecular Weight (calculated)

66699.5 Da

IEP (calculated)

6.449

GRAVY (calculated)

-0.428

Length

578 amino acids

Sequence
(BLAST)

001: MVSKESCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPSNTR FQRGSSSIRR RFSTISTPQP SAGFSQPPAT PLPQEEDEVI DGDLYLLAKS
101: YFDCREYRRA SHVLRDQMSN KSLFLRCYAL YLAGEKRKEE EMIELEGPLG KSDAINRELV SLERELSALK RTGAIDSFGL YLYGVVLKEK GNESLARASL
201: VESVNSYPWN WSAWSELQSL CTSIEILNSL NLNSHWMKEF FLGSAYQELR MHGESLAKYE YLQGIFSFSN YIQAQTAKAQ YSLREFDQVE IMFEDLLRND
301: PYRVEDMDLY SNVLYAKEAC AALSFLAHKV FLTDKYRPES CCIVGNYYSL KGQHEKAVMY FRRALKLNKK YLSAWTLMGH EYVEMKNTSA AVDAYRRAVD
401: VNPCDYRAWY GLGQAYEMMG MPFYALHYFR KSIFFLPNDS RLWIAMAKCY QSEQLHMLEE AIKCYKRAVN CGDTEGIALN QLAKLHQKLG RNEEAAFYFE
501: KDLERMDAEG LEGPNMFEAL VFLATHLKTN KKFDEAEVYC TRLLDYSGPE KEKAKSLLRG IRMAQTDFPS MDMEHFPL

Best Arabidopsis Sequence Match ( AT3G48150.1 )
(BLAST)

001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI

Arabidopsis Description

APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.