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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • nucleus 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000638.1-P
Bra003085.1-P
Bra010714.1-P
Bra012987.1-P
Bra022624.1-P
Bra026236.1-P
Bra028416.1-P
Bra033597.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39100.1 Bra000638.1-P AT4G08150.1 21798944
AT2G39100.1 Bra026236.1-P AT4G17220.1 21798944
AT2G39100.1 Bra010714.1-P AT4G39050.1 21798944
AT2G39100.1 Bra033597.1-P AT4G39050.1 21798944
AT2G39100.1 Bra028416.1-P AT5G38600.1 21798944
AT2G39100.1 Bra003085.1-P AT5G53060.1 21798944
AT2G39100.1 Bra022624.1-P AT5G53060.1 21798944
AT2G39100.1 Bra012987.1-P AT5G61010.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY18354 Canola nucleus 91.23 98.48
AT2G39100.1 Thale cress plastid 69.47 66.89
PGSC0003DMT400079098 Potato mitochondrion 41.75 43.75
Solyc06g054580.2.1 Tomato nucleus 41.4 43.38
VIT_05s0020g01720.t01 Wine grape plastid 46.32 38.82
Protein Annotations
EnsemblPlants:Bra017091.1EnsemblPlants:Bra017091.1-PEnsemblPlantsGene:Bra017091Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CSPANTHER:PTHR22937PANTHER:PTHR22937:SF95PFAM:PF13639
PFscan:PS50089ScanProsite:PS00518SEG:segSMART:SM00184SUPFAM:SSF57850UniParc:UPI0002544B95
UniProt:M4DKR0MapMan:35.2::::
Description
AT2G39100 (E=2e-058) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA04:+:16659780..16661043
Molecular Weight (calculated)
32905.6 Da
IEP (calculated)
9.954
GRAVY (calculated)
-0.495
Length
285 amino acids
Sequence
(BLAST)
001: MPTTSSSRSI GKRNSPPRIG EKFPERAILA AVKEQSCPIC LENLTHRRAA VIPSCRHGYC LGCIRKWSGL KRSCPLCNAR FDSWLVVNDL ASRRFREERL
101: PPLRDRETVT YHRRRSMDVL ESSSSRRSRP LPWRRSFGRP GSVPDHVILE RKLRWRASIY DRQLRAVRLH SRPSLLLVND DHTKARIIER IEPWMRREVQ
201: AVLGDPDPSI IVHFASALFI KRLERENNGQ SGQVGGIVME DQVSSSLGVF LGDKEDIFWH ELRCFAESSL TMETYDAVVE YIEVE
Best Arabidopsis Sequence Match ( AT2G39100.1 )
(BLAST)
001: MPPLPSSTAP SSSRHLRSPE SIAKFAGRAI FPALQGKSCP ICLENLTERR SAAVITVCKH GYCLACIRKW SSFKRNCPLC NTRFDSWFIV SDFASRKYHK
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ73]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.