Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g054580.2.1 | Tomato | nucleus | 42.35 | 52.94 |
| PGSC0003DMT400079098 | Potato | mitochondrion | 41.76 | 52.21 |
| CDY18354 | Canola | nucleus | 37.35 | 48.11 |
| AT2G39100.1 | Thale cress | plastid | 40.59 | 46.62 |
| Bra017091.1-P | Field mustard | nucleus | 38.82 | 46.32 |
| CDX93287 | Canola | cytosol, plastid | 38.24 | 41.8 |
Protein Annotations
| EntrezGene:100259613 | wikigene:100259613 | Gene3D:3.30.40.10 | MapMan:35.2 | ProteinID:CCB50338 | ProteinID:CCB50338.1 |
| UniProt:F6HDG8 | EMBL:FN595749 | InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100259613 | wikigene:LOC100259613 |
| PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF95 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000210907B | ArrayExpress:VIT_05s0020g01720 | EnsemblPlantsGene:VIT_05s0020g01720 | EnsemblPlants:VIT_05s0020g01720.t01 | RefSeq:XP_002276564 |
| RefSeq:XP_002276564.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
No Description!
Coordinates
chr5:-:3443511..3447091
Molecular Weight (calculated)
38310.8 Da
IEP (calculated)
9.915
GRAVY (calculated)
-0.289
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MEASSPRTSS SSSLSSSSSS SRMSRGKFVK KVMAPAIEGK SCPICLSHVV DRRAAVITAC LHAYCFRCIR RWSDLKRKCP LCNAHFDSLF YRISLSSQTF
101: LKEKLRPLAE GGTVNFGGGN AGRRVLRRYW DESNSDSRRT RPLPWRRSFG RPGSLPSDVV AERILQWRAS IYSQGMQAVP FSPRNRLKQN ISGNSSAKER
201: ILQRIEPWIQ RELHAILHDP DAAVIVHVAT SLFVSSLEEN TPLGYLGGED DFLAPLRSFL HNQTNTFWHE LSCFADSTFN METYDAVVKY EPSDLMGGNC
301: CAAGKIMFFF FCHQSLSNLN VVFVVHKIAF SRAKHSRVQE
101: LKEKLRPLAE GGTVNFGGGN AGRRVLRRYW DESNSDSRRT RPLPWRRSFG RPGSLPSDVV AERILQWRAS IYSQGMQAVP FSPRNRLKQN ISGNSSAKER
201: ILQRIEPWIQ RELHAILHDP DAAVIVHVAT SLFVSSLEEN TPLGYLGGED DFLAPLRSFL HNQTNTFWHE LSCFADSTFN METYDAVVKY EPSDLMGGNC
301: CAAGKIMFFF FCHQSLSNLN VVFVVHKIAF SRAKHSRVQE
001: MPPLPSSTAP SSSRHLRSPE SIAKFAGRAI FPALQGKSCP ICLENLTERR SAAVITVCKH GYCLACIRKW SSFKRNCPLC NTRFDSWFIV SDFASRKYHK
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ73]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.