Factsheet for VIT_17s0000g07350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00290.t01
VIT_02s0025g00110.t01
VIT_02s0087g00270.t01
VIT_03s0063g00940.t01
VIT_03s0088g01000.t01
VIT_04s0008g02340.t01	plasma membrane
VIT_06s0004g07440.t01	plasma membrane
VIT_07s0141g00320.t01
VIT_07s0141g00610.t01
VIT_07s0289g00020.t01
VIT_08s0007g02340.t01	plasma membrane
VIT_08s0007g07790.t01
VIT_08s0040g02730.t01	plasma membrane
VIT_09s0002g04580.t01
VIT_09s0018g02010.t01	plasma membrane
VIT_09s0018g02030.t01	plasma membrane
VIT_12s0035g01840.t01
VIT_13s0019g04770.t01	plasma membrane
VIT_14s0066g01910.t01
VIT_14s0068g00250.t01	plasma membrane
VIT_15s0021g00250.t01
VIT_18s0001g05810.t01
VIT_18s0001g11790.t01
VIT_18s0072g00720.t01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61010.1	VIT_18s0001g05810.t01	AT1G22840.1	21798944
AT5G61010.1	VIT_18s0001g11790.t01	AT1G47510.1	21798944
AT5G61010.1	VIT_09s0018g02010.t01	AT1G51640.1	24307681
AT5G61010.1	VIT_09s0018g02030.t01	AT1G51640.1	24307681
AT5G61010.1	VIT_02s0087g00270.t01	AT1G61590.1	21798944
AT5G61010.1	VIT_18s0072g00720.t01	AT1G76850.1	24307681
AT5G61010.1	VIT_09s0002g04580.t01	AT1G79910.1	21798944
AT5G61010.1	VIT_12s0035g01840.t01	AT2G02560.1	21798944
AT5G61010.1	VIT_07s0141g00610.t01	AT2G30580.1	21798944
AT5G61010.1	VIT_08s0007g07790.t01	AT2G42260.1	21798944
AT5G61010.1	VIT_14s0066g01910.t01	AT3G01370.1	21798944
AT5G61010.1	VIT_07s0141g00320.t01	AT3G07480.1	21798944
AT5G61010.1	VIT_07s0289g00020.t01	AT3G07480.1	21798944
AT5G61010.1	VIT_08s0040g02730.t01	AT3G09530.1	24307681
AT5G61010.1	VIT_13s0019g04770.t01	AT3G10380.1	24307681
AT5G61010.1	VIT_15s0021g00250.t01	AT3G17668.1	21798944
AT5G61010.1	VIT_03s0063g00940.t01	AT3G19100.1	21798944
AT5G61010.1	VIT_14s0068g00250.t01	AT3G29400.1	24307681
AT5G61010.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944
AT5G61010.1	VIT_04s0008g02340.t01	AT4G31540.1	24307681
AT5G61010.1	VIT_03s0088g01000.t01	AT4G33690.1	21798944
AT5G61010.1	VIT_02s0025g00110.t01	AT5G41370.1	21798944
AT5G61010.1	VIT_08s0007g02340.t01	AT5G52340.1	24307681
AT5G61010.1	VIT_06s0004g07440.t01	AT5G58430.1	24307681

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g00250.t01	Wine grape	cytosol	58.01	57.21
KRH63230	Soybean	cytosol	53.19	54.29
KRH54704	Soybean	cytosol	52.57	53.57
Solyc03g115070.1.1	Tomato	cytosol	52.72	53.39
PGSC0003DMT400063083	Potato	cytosol	52.1	52.76
Bra012987.1-P	Field mustard	cytosol	41.21	48.18
CDY02176	Canola	cytosol	41.21	48.18
AT5G61010.1	Thale cress	cytosol	46.97	47.26
GSMUA_Achr4P23470_001	Banana	cytosol	41.84	45.06
GSMUA_Achr7P00520_001	Banana	cytosol	41.06	43.56
KXG33434	Sorghum	peroxisome	39.97	42.41
TraesCS3D01G299200.1	Wheat	peroxisome	39.5	42.4
TraesCS3A01G302600.1	Wheat	peroxisome	39.35	42.24
TraesCS3B01G333800.1	Wheat	cytosol	39.35	42.24
HORVU3Hr1G073850.1	Barley	cytosol, nucleus, peroxisome	39.04	41.56
HORVU3Hr1G073910.1	Barley	cytosol	38.57	41.4
Os01t0763750-01	Rice	cytosol	38.26	40.86
VIT_17s0000g01450.t01	Wine grape	cytosol	40.9	40.03
Zm00001d043365_P001	Maize	peroxisome	39.19	39.44
VIT_09s0002g00910.t01	Wine grape	cytosol	34.84	36.96
CDY23090	Canola	nucleus	46.03	31.56
VIT_06s0004g07440.t01	Wine grape	cytosol	29.7	30.46
VIT_01s0146g00160.t01	Wine grape	nucleus	30.17	29.66
VIT_06s0004g04010.t01	Wine grape	plastid	27.53	28.73
VIT_13s0073g00170.t01	Wine grape	cytosol	28.46	28.15
VIT_08s0007g02340.t01	Wine grape	cytosol	27.99	27.78
VIT_00s0317g00140.t01	Wine grape	plastid	26.28	27.17
VIT_08s0040g02730.t01	Wine grape	plastid	25.51	25.83

Protein Annotations

Gene3D:1.20.1280.170	EntrezGene:100265529	wikigene:100265529	MapMan:22.6.3.1	EMBL:AM484038	ProteinID:CAN77661
ProteinID:CAN77661.1	ProteinID:CCB43030	ProteinID:CCB43030.1	ncoils:Coil	InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70
UniProt:F6GSY9	EMBL:FN594950	GO:GO:0000145	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810
GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0070062
GO:GO:1903533	GO:GO:1903553	EntrezGene:LOC100265529	wikigene:LOC100265529	PFAM:PF03081	PANTHER:PTHR12542
PANTHER:PTHR12542:SF49	SUPFAM:SSF74788	TIGR:TC70745	UniParc:UPI00015C850D	ArrayExpress:VIT_17s0000g07350	EnsemblPlantsGene:VIT_17s0000g07350
EnsemblPlants:VIT_17s0000g07350.t01	unigene:Vvi.18002	unigene:Vvi.25753	RefSeq:XP_002280826	RefSeq:XP_002280826.1	SEG:seg

Description

No Description!

Coordinates

chr17:-:8213757..8215907

Molecular Weight (calculated)

73529.2 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.304

Length

643 amino acids

Sequence
(BLAST)

001: MEECRAIIPT YEGEEHVVAA AHHMVKALMA SKNLTGDFKK ILVDLDTHLS TMTILNERKG DELSEVELRL KCAEKKIMNR ESKQLMIWDS GSKQVLEYLQ
101: AVEEVQTLKE SLESLSLNGG EKQKRLLRQA ESILQIAMVR LEEELLHILR HKKQSFEPEF ASFHSCEEVV VYEESIVSVE DDISEDSSRR DSNGDESKEY
201: TIGLINPEVI PHLKSIANVM FASNYDQEFC QAFIGARKDA LDEYLGILEL EKLSIEDVLR MDWGNLNYEI KKWIRAMKII IRVYLASEKR LCDHILGDFG
301: SINPICFVET SKVSMLRLLN FGEAVAIGQH LPEKLFSLLN MYEALADLLL HIDALFSEEA GASIRIDFHK LQRELGDAAG ATFMEFETAI ASYTSTSPFP
401: GGGILHLTRY VMNYIKILTE YSNTLNLLLK DQNGEDPEPL IEAENAQGVP SQVVCPVAHH LRSIASLLES NLESRSKLYK DVSLQHIFLM NNIHYMVQKV
501: KGSELRGFFG DEWIRKHMVK VQQRVTSYER TTWSSVLSLL REDGNSGSSS PWKMILKERC RGFSIAFEEV YKNQTAWFIP DPQLRDNLRI LTSQKIIQAY
601: RGFIGRNSEN LSDKHIKYSA DDLENYVHNL FEGSPKSLNN RRK

Best Arabidopsis Sequence Match ( AT5G61010.1 )
(BLAST)

001: MAEFDSKVPV SGMNNHVFEA CHHVVKALRA SDNNLDANLR KLLSDLEMHL STFGIADTKV EDAGFSEIKK RFKEAVKRIR SWETNQSTMF EAGLSEADQF
101: FQALYDVQTV LVGFKALPMK TNQMEKDVYN QATVALDIAM LRLEKELCDV LHQHKRHVQP DYLAVSSRRK DIVYDESFVS LDDEVIVEAS SHEDDEQISD
201: FYNSDLVDPI VLPHIKAIAN AMFACEYDQP FCEAFIGVQR EALEEYMVTL EMERFSCVDV LRMDWEDLNG AMRKWTKVVK IITQVYLASE KQLCDQILGD
301: FESISTACFI EISKDAILSL LNFGEAVVLR SCKPEMLERF LSMYEVSAEI LVDVDNLFPD ETGSSLRIAF HNLSKKLADH TTTTFLKFKD AIASDESTRP
401: FHGGGIHHLT RYVMNYLKLL PEYTDSLNSL LQNIHVDDSI PEKTGEDVLP STFSPMARHL RSIVTTLESS LERKAQLYAD EALKSIFLMN NFRYMVQKVK
501: GSELRRLFGD EWIRKHIASY QCNVTNYERS TWSSILALLR DNNDSVRTLR ERCRLFSLAF DDVYKNQTRW SVPDSELRDD LHISTSVKVV QSYRGFLGRN
601: AVRIGEKHIR YTCEDIENML LDLFECLPSP RSLRSSRKR

Arabidopsis Description

ATEXO70E2Exocyst complex component EXO70E2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.