Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g00720.t01 | plasma membrane |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10380.1 | VIT_18s0072g00720.t01 | AT1G76850.1 | 24307681 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34813 | Soybean | cytosol | 78.01 | 74.86 |
| KRG91961 | Soybean | endoplasmic reticulum | 77.52 | 74.46 |
| AT3G10380.1 | Thale cress | cytosol | 71.75 | 69.71 |
| Solyc11g008340.1.1 | Tomato | nucleus | 77.42 | 69.29 |
| CDY08608 | Canola | nucleus | 70.77 | 68.63 |
| CDY00928 | Canola | cytosol | 70.87 | 67.76 |
| CDY56705 | Canola | cytosol | 71.16 | 67.53 |
| CDY41338 | Canola | nucleus | 70.67 | 67.01 |
| CDX73930 | Canola | cytosol | 69.31 | 66.64 |
| CDY00666 | Canola | cytosol | 69.21 | 66.54 |
| Bra029834.1-P | Field mustard | cytosol | 70.97 | 65.88 |
| Bra001356.1-P | Field mustard | cytosol | 67.16 | 64.03 |
| VIT_13s0019g04810.t01 | Wine grape | cytosol | 0.49 | 5.81 |
Protein Annotations
| EntrezGene:100253015 | wikigene:100253015 | MapMan:22.6.3.5 | ProteinID:CCB56153 | ProteinID:CCB56153.1 | UniProt:F6HND4 |
| EMBL:FN595998 | GO:GO:0000003 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006612 |
| GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006893 | GO:GO:0006903 | GO:GO:0006904 | GO:GO:0007154 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009791 |
| GO:GO:0009856 | GO:GO:0009875 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0048354 |
| GO:GO:0060321 | GO:GO:0070062 | EntrezGene:LOC100253015 | wikigene:LOC100253015 | PFAM:PF04048 | PANTHER:PTHR14146 |
| InterPro:Sec8_exocyst | TIGR:TC67535 | TIGR:TC68839 | UniParc:UPI0002109B73 | ArrayExpress:VIT_13s0019g04770 | EnsemblPlantsGene:VIT_13s0019g04770 |
| EnsemblPlants:VIT_13s0019g04770.t01 | RefSeq:XP_002269663 | RefSeq:XP_002269663.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr13:-:6413576..6459257
Molecular Weight (calculated)
113698.0 Da
IEP (calculated)
6.294
GRAVY (calculated)
-0.196
Length
1023 amino acids
Sequence
(BLAST)
(BLAST)
0001: MWKERNRIAF DNEALSIQRL KTSFILRLFS ESAASISVLK VDLADAKKLL GARNKQLHQL WYRSVTLRHI IALLDQVEGI AKVPARIEKL IAEKQFYAAV
0101: QLHAQSTLML EREGLQTVGA LQDVRSELTK LRGIIFYKIL EDLHAHLYNK GEYSSAASSI HERDDEVPTT TAVAFSMNSS QPLSRRTRLL KGDNQFGVLG
0201: LGDGYRPGSI DGGSSFDGHD EEGALELHDE ATLDGYNAIT KVNGGDGSQK DIKIVSHQIP PWLSYATPDE FLESMKKSDA PLHVKYLQTM VECLCMLGKV
0301: AAAGAMICQR LRPTIHEIIT SKIKAHAELV NSTRSGICRA AHTATTGLHY LKGQLESYQS PKQKRQNGIS LAGTLLAVSP VSPVMAPAGT AQTAAKELLD
0401: SILDIVVRIF ENHVVVGELL ESKGTQVDMN TPKSVTVEVN WNHDSEASQV TGGYSIGFSL TVLQSECQQL ICEILRATPE AASADATVQT ARLASKAPSK
0501: EKRDRSEDGL TFAFRFTDAT ISVPNQGVDL IRQGWTRRGP NVLQEGYGSA AILPEQGIYL AASIYRPVIQ FTDKIASMLP KKYSQLGNDG LLAFVENFVK
0601: DHFLPTMFVD YRKGVQQAIS SPAAFRPRSH AASTYSPLVE KGRPVLQGLL AIDFLAKEVL GWAQAMPKFA GDLVKYVQTF LERTYERCRT SYMEAWILFY
0701: TLAVLEKQSY MLIGRHDIEK LMRCDPASAC LPNPFGQPNM ESNASDVDVE VEMELCDLLL SLRPIKQENL IRDDNKLILL ASLSDSLEYV ADSIERLGKA
0801: SIRASNPVEE NGKQKMHHHT QTSSAPPRNL ASFADEYRKL AIDCLKVLRV EMQLETIFHM QEMTSREYLD DQDAEEPDDF IISLTAQITR RDEEMAPFVA
0901: GVKRNYIFGG ICSIAANASM KALADMKSIN LFGVQQICRN SIALEQALAA IPSIDSETVQ QRLDHIRTYY ELLNMPFEAL LAFITEHENL FTATEYTNLL
1001: KVQVPGREIP ADARERVSEI LSR
0101: QLHAQSTLML EREGLQTVGA LQDVRSELTK LRGIIFYKIL EDLHAHLYNK GEYSSAASSI HERDDEVPTT TAVAFSMNSS QPLSRRTRLL KGDNQFGVLG
0201: LGDGYRPGSI DGGSSFDGHD EEGALELHDE ATLDGYNAIT KVNGGDGSQK DIKIVSHQIP PWLSYATPDE FLESMKKSDA PLHVKYLQTM VECLCMLGKV
0301: AAAGAMICQR LRPTIHEIIT SKIKAHAELV NSTRSGICRA AHTATTGLHY LKGQLESYQS PKQKRQNGIS LAGTLLAVSP VSPVMAPAGT AQTAAKELLD
0401: SILDIVVRIF ENHVVVGELL ESKGTQVDMN TPKSVTVEVN WNHDSEASQV TGGYSIGFSL TVLQSECQQL ICEILRATPE AASADATVQT ARLASKAPSK
0501: EKRDRSEDGL TFAFRFTDAT ISVPNQGVDL IRQGWTRRGP NVLQEGYGSA AILPEQGIYL AASIYRPVIQ FTDKIASMLP KKYSQLGNDG LLAFVENFVK
0601: DHFLPTMFVD YRKGVQQAIS SPAAFRPRSH AASTYSPLVE KGRPVLQGLL AIDFLAKEVL GWAQAMPKFA GDLVKYVQTF LERTYERCRT SYMEAWILFY
0701: TLAVLEKQSY MLIGRHDIEK LMRCDPASAC LPNPFGQPNM ESNASDVDVE VEMELCDLLL SLRPIKQENL IRDDNKLILL ASLSDSLEYV ADSIERLGKA
0801: SIRASNPVEE NGKQKMHHHT QTSSAPPRNL ASFADEYRKL AIDCLKVLRV EMQLETIFHM QEMTSREYLD DQDAEEPDDF IISLTAQITR RDEEMAPFVA
0901: GVKRNYIFGG ICSIAANASM KALADMKSIN LFGVQQICRN SIALEQALAA IPSIDSETVQ QRLDHIRTYY ELLNMPFEAL LAFITEHENL FTATEYTNLL
1001: KVQVPGREIP ADARERVSEI LSR
0001: MGIFNGLPVP SDKTYLREEL ARIDESWAAA RFDSLPHVVH ILTSKDREAD IHILKEQSDV VEEVVDEVVH AYHGGFNKAI QNYSQILRLF SESTEKIGDL
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
Arabidopsis Description
SEC8SEC8 [Source:UniProtKB/TrEMBL;Acc:A0A178VA38]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.