Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10380.1 | CDX68084 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | CDX85974 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | CDY13565 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | CDY45948 | AT1G76850.1 | 24307681 |
| AT3G10380.1 | CDY45950 | AT1G76850.1 | 24307681 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08608 | Canola | nucleus | 97.38 | 98.77 |
| Bra029834.1-P | Field mustard | cytosol | 98.97 | 96.1 |
| AT3G10380.1 | Thale cress | cytosol | 91.96 | 93.45 |
| CDY41338 | Canola | nucleus | 92.06 | 91.29 |
| CDY56705 | Canola | cytosol | 91.87 | 91.19 |
| CDX73930 | Canola | cytosol | 90.28 | 90.79 |
| CDY00666 | Canola | cytosol | 89.53 | 90.04 |
| KRG91961 | Soybean | endoplasmic reticulum | 72.9 | 73.24 |
| KRH34813 | Soybean | cytosol | 72.8 | 73.08 |
| VIT_13s0019g04770.t01 | Wine grape | cytosol | 67.76 | 70.87 |
| HORVU7Hr1G061610.1 | Barley | cytosol | 8.22 | 68.22 |
| GSMUA_Achr3P23130_001 | Banana | cytosol | 14.39 | 67.84 |
| Solyc11g008340.1.1 | Tomato | nucleus | 70.56 | 66.05 |
| HORVU7Hr1G061620.1 | Barley | plasma membrane | 15.98 | 61.29 |
| Os08t0318500-01 | Rice | plasma membrane | 59.72 | 60.4 |
| EER99853 | Sorghum | cytosol | 58.78 | 59.79 |
| TraesCS7A01G284500.1 | Wheat | cytosol | 58.6 | 59.54 |
| TraesCS7B01G181500.1 | Wheat | cytosol | 20.65 | 59.09 |
| Zm00001d022502_P003 | Maize | cytosol | 58.78 | 58.84 |
| TraesCS7D01G282100.6 | Wheat | plastid | 23.08 | 58.39 |
| GSMUA_Achr3P23140_001 | Banana | cytosol | 45.42 | 57.93 |
| HORVU7Hr1G061640.1 | Barley | cytosol | 13.83 | 56.06 |
Protein Annotations
| EnsemblPlants:CDY00928 | EnsemblPlantsGene:GSBRNA2T00110931001 | GO:A0A078EN64 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | InterPro:Sec8_exocyst | PANTHER:PTHR14146 | PFAM:PF04048 | ProteinID:CDY00928 | ProteinID:CDY00928.1 |
| SEG:seg | UniParc:UPI0004EF23C2 | MapMan:22.6.3.5 | : | : | : |
Description
BnaC05g42720D
Coordinates
chrLK031923:-:155131..164075
Molecular Weight (calculated)
118504.0 Da
IEP (calculated)
5.703
GRAVY (calculated)
-0.288
Length
1070 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGTFDGLPVP SDKTYLREEL ARIDESWVAA RFDSLPHVVH ILTSKDRETD ILLLREQSDV VEEVVDEVVH AYHGGFNKAI QNYSQILRLF SESTDKIGDL
0101: KHDLAEAKRS LGTRNKQLHQ LWYRSVTLRH IIALLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELA KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSHRTA STEEGSSFDG HDEEDSVEHD EATGDGQTIR
0301: NGTDSKLLSY QLPPWLSDSS PDEFIEAVRK SDDPLHVKYL QTLVQCLCML GKVAAAGAII CQRLRPTIHE IIISKIKAHM ETKNLSKSAC SQGDRTGAAG
0401: LHFIKGQSEA YRLSKDKPQN GTSNSGTHLA VSPVSPLMAP GGKAQAAAKD LLDSILDTIV KIFENHVVVG ELLELRASQH DINTPKSLPT DVNWNADSEA
0501: SQATGGYTIS FPLTVLQSEC QQLICEILRA TPEAASADAA AQTAKLAKKA PKKDKRQALL SALVKWSVEE DASEDGVTFT FRFTDATVSI SNQAGADLIR
0601: QGWGKRAPNS SQEGYGSAAV LPEQGMYLAA SIYRPVLQFT DKITSMLPKK HSQLVNDGLL TFTENFVKDH LLPTMFVDYR KGVQQAISSA AAFRPRAHTT
0701: TYTPTVEKGR PILQGLLAIE LLAKEVLGWA QAMPKFATDL VKYVQTFLER TFERCRTAYM EAVLEKLSYR LIGRHDIERL MRLDTGSACL PSQLGHSVSH
0801: SEAVGSEVEL CELFLNLPSI KQDNLIRDDN KLILLASLSD SLEYVADSIE RLGQAVPRAA SQAEGNSRNQ ATSPRNLASF ADEYRKLATD CLKVLRVEMQ
0901: LETVFHLQEM TNREYLEDED AEEPDDFVIS LTSQITRRDE GMAPFISGEK RNYVFGGICG IAASASIKAL ADMRSINLFG VQQICRNTIA LEQAMAAIPY
1001: VDGDSVQQNL DRVRTYYELL NMPFEALLAF IAEHDQMFTP TEYSNLLKVN VPGRDTPSDA QIRLSEILSH
0101: KHDLAEAKRS LGTRNKQLHQ LWYRSVTLRH IIALLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELA KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSHRTA STEEGSSFDG HDEEDSVEHD EATGDGQTIR
0301: NGTDSKLLSY QLPPWLSDSS PDEFIEAVRK SDDPLHVKYL QTLVQCLCML GKVAAAGAII CQRLRPTIHE IIISKIKAHM ETKNLSKSAC SQGDRTGAAG
0401: LHFIKGQSEA YRLSKDKPQN GTSNSGTHLA VSPVSPLMAP GGKAQAAAKD LLDSILDTIV KIFENHVVVG ELLELRASQH DINTPKSLPT DVNWNADSEA
0501: SQATGGYTIS FPLTVLQSEC QQLICEILRA TPEAASADAA AQTAKLAKKA PKKDKRQALL SALVKWSVEE DASEDGVTFT FRFTDATVSI SNQAGADLIR
0601: QGWGKRAPNS SQEGYGSAAV LPEQGMYLAA SIYRPVLQFT DKITSMLPKK HSQLVNDGLL TFTENFVKDH LLPTMFVDYR KGVQQAISSA AAFRPRAHTT
0701: TYTPTVEKGR PILQGLLAIE LLAKEVLGWA QAMPKFATDL VKYVQTFLER TFERCRTAYM EAVLEKLSYR LIGRHDIERL MRLDTGSACL PSQLGHSVSH
0801: SEAVGSEVEL CELFLNLPSI KQDNLIRDDN KLILLASLSD SLEYVADSIE RLGQAVPRAA SQAEGNSRNQ ATSPRNLASF ADEYRKLATD CLKVLRVEMQ
0901: LETVFHLQEM TNREYLEDED AEEPDDFVIS LTSQITRRDE GMAPFISGEK RNYVFGGICG IAASASIKAL ADMRSINLFG VQQICRNTIA LEQAMAAIPY
1001: VDGDSVQQNL DRVRTYYELL NMPFEALLAF IAEHDQMFTP TEYSNLLKVN VPGRDTPSDA QIRLSEILSH
0001: MGIFNGLPVP SDKTYLREEL ARIDESWAAA RFDSLPHVVH ILTSKDREAD IHILKEQSDV VEEVVDEVVH AYHGGFNKAI QNYSQILRLF SESTEKIGDL
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
0101: KHDLAEAKQS LGARNKQLHQ LWYRSVTLRH IISLLDQIEG IAKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG ALQDVRSELT KLRGALFFKI
0201: LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS SQPLSRRTRT LKGDSQFGVR GLTNGSYRTA SNDESSSFDG HDEEDSVEHD ESTADTARNG
0301: TDSKLLSHQL PPWLSDSTPD EFIEAVRKSD DPLHVKYLQT LVQCLCMLGK VAAAGAIICQ KLRPTIHEII ISKIKAHLET TNLSKSACSQ GDRSVAAGLH
0401: LIKGQSEAYR LSKEKPQNGI SNSGTHLAVS PVSPLMAPGG KAQAAAKELL DSILDTIVKI FENHVVIGEL LEMKASQHDI NTPRSLPTDV NWNTESEASQ
0501: ATGGYTISFP LTVLQSECQQ LICEILRATP EAASADAAAQ TAKLAKKAPK KDKRDAPEDG LTFTFRFTDA TVSISNQGAD LIRQGWGKRA PNASLEGYGS
0601: AAVLPEQGIY LAASIYRPVL QFTDKITSML PKKHSQLVND GLLTFTENFV KDHLLPTMFV DYRKGVQQAI SSAAAFRPRA HTTTYTATVE KGRPILQGLL
0701: AIDLLAKEVL GWAQAMPKFA TDLVKYVQTF LERTFERCRT SYMEAVLEKL SYMLIGRHDI EKLMRLDAAS ACLPSTLGHA VSHSEAVGTE VELSDLFLSL
0801: RPIKQDNLIR DDNKLILLAS LSDSLEYVAD SIERLGQAVP RVASQAEGNS RNQAASPRNL ASFADEYRKL ATDCLKVLRV EMQLETVFHL QEMTNREYLE
0901: DEDAEEPDDF VISLTSQITR REEGMAPFIS GEKRNYVFGG ISGIAANASI KALADMRSIN LFGVQQICRN TIAVEQAMAA IPYIDGETVQ QNLDRVRTYF
1001: ELLNMPFEAL LAFIAEHDQM FTPTEYSNLL KVNVPGRDTP SDAQSRLLEI LSH
Arabidopsis Description
SEC8SEC8 [Source:UniProtKB/TrEMBL;Acc:A0A178VA38]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.