Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68084 | Canola | nucleus | 97.78 | 97.96 |
| CDY13565 | Canola | nucleus | 86.14 | 88.34 |
| AT1G76850.1 | Thale cress | nucleus | 88.82 | 88.17 |
| CDY45948 | Canola | cytosol, nucleus, peroxisome | 39.09 | 87.76 |
| VIT_18s0072g00720.t01 | Wine grape | cytosol, plastid | 60.91 | 67.38 |
| CDY45951 | Canola | extracellular | 9.7 | 66.04 |
| CDY45950 | Canola | cytosol | 20.89 | 64.2 |
| KRH34989 | Soybean | endoplasmic reticulum | 63.59 | 63.29 |
| KRG91797 | Soybean | cytosol | 63.12 | 62.72 |
| Solyc12g056520.1.1 | Tomato | cytosol | 56.38 | 62.44 |
| Solyc04g071350.2.1 | Tomato | nucleus | 63.22 | 61.84 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 57.76 | 56.41 |
| TraesCS2D01G298000.2 | Wheat | nucleus | 55.64 | 56.16 |
| TraesCS2B01G316400.1 | Wheat | nucleus | 55.45 | 56.13 |
| TraesCS2A01G300100.3 | Wheat | nucleus | 55.55 | 55.85 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 51.29 | 55.56 |
| OQU81566 | Sorghum | nucleus | 56.28 | 55.46 |
| Os04t0421900-01 | Rice | plasma membrane | 56.38 | 55.4 |
| Zm00001d036062_P001 | Maize | cytosol | 7.67 | 47.7 |
| Zm00001d039959_P001 | Maize | cytosol | 7.12 | 45.56 |
| PGSC0003DMT400027989 | Potato | nucleus | 8.69 | 45.41 |
| CDY04603 | Canola | cytosol | 3.6 | 39.0 |
Protein Annotations
| EnsemblPlants:CDX85974 | EnsemblPlantsGene:GSBRNA2T00143834001 | GO:A0A078DC86 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006893 | GO:GO:0008150 | InterPro:Cullin_repeat-like_dom_sf |
| InterPro:EXOC2/Sec5 | PANTHER:PTHR13043 | PFAM:PF15469 | ProteinID:CDX85974 | ProteinID:CDX85974.1 | SEG:seg |
| SUPFAM:SSF74788 | UniParc:UPI0004EB082A | MapMan:22.6.3.3 | : | : | : |
Description
BnaC06g21600D
Coordinates
chrLK031843:+:1255279..1261541
Molecular Weight (calculated)
121301.0 Da
IEP (calculated)
5.407
GRAVY (calculated)
-0.481
Length
1082 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSDDEDELL QMALKEQSQR DLTYQKPPSS SSRKPVANLV QQPRQQKPAP PKKSAAAAAV RKPSMDDDDE SEVELLSISS GDDDLERDRE TGGGGAGKGR
0101: GSDVRERGGR AKKEDDGAWD GEEPDCWKRV NEAELARRVR DMRESRTAPV VQKLEDKSPA PGKKVVLTSL QSLPRGMECI DPLKLGIIDN KTLRLITERS
0201: GSPSKSEKVD NTLREKLIYF SDNFDPKLFL SRIHQHTSAA DLEAGALGLK SDLKGRNLQK KQLVKDNFDC FVSCKTTIDD IEAKLKRIES DPEGSGTTHL
0301: FNCMKSVTSR ATRAFEPLFE RQAQAEKIRS VQGMLQRFRT LFNLPSIIRN SISKGEYDLA VREYKKAKSI ALPSHVNILK RVLEEVEKIM LEFKGTLYKS
0401: MEDPKIDFTS LENTVRLLLE LEPESDPVWH YLNVENHRIH GLLEKCTYDH EARVEILRNE THERAISDAK WQQIQQNVVP YSDAASSNEN NEVQVDPQSV
0501: EFPSEEIDAL KGRYIKRLTA VLVHHIPLFW KTAISVFSGK FAKSSQVTDS SANKAEEKVT EARYSTHSLE EVAAMIRKTI SVYEAKVHST FCDFDESCIL
0601: RPFMSDAIHE VSKACQSFET KDSAPHSAVV ALRKVQAEIT KIYIQRLCSW MRASTEGISK EETWVPVSIL ERNRSPYAIS YLPLAFRSVI VSGMEQINLM
0701: ILSVKGEAAK SEDMFAQIEE ILISVRMAFL NCFLDFAAHL EQIAADLSQS TSTREDWKNG YSDDQQEVPS ANTYGSVVDP HRRLLMVLSN IGYCKDELAS
0801: ELYNKFKYTW LQSRDNDEDS SDLQDLIMSF SGLGEKVLEH YTFAKANLIR TAATNYLLDS GIQWGSAPQV KGIRDAAVEL LHTLVAVHAE VFAGAKPLLD
0901: KILGVLIEGL VDTFLSLVEE NRTNDLSSID ANGFCQLMFE LEYFETVLNL YFTSDATASL KTLQGTVLEI AIESISEAVE TTPGHNRRPT RGSEDTVSDD
1001: RQGSSVSADD LLALTKQYSS ELLQAEMERT RLNTACFAES VPVEPTPTLP KTAYRVSMDS PSRNYRGSQS SGSPVNARPR RR
0101: GSDVRERGGR AKKEDDGAWD GEEPDCWKRV NEAELARRVR DMRESRTAPV VQKLEDKSPA PGKKVVLTSL QSLPRGMECI DPLKLGIIDN KTLRLITERS
0201: GSPSKSEKVD NTLREKLIYF SDNFDPKLFL SRIHQHTSAA DLEAGALGLK SDLKGRNLQK KQLVKDNFDC FVSCKTTIDD IEAKLKRIES DPEGSGTTHL
0301: FNCMKSVTSR ATRAFEPLFE RQAQAEKIRS VQGMLQRFRT LFNLPSIIRN SISKGEYDLA VREYKKAKSI ALPSHVNILK RVLEEVEKIM LEFKGTLYKS
0401: MEDPKIDFTS LENTVRLLLE LEPESDPVWH YLNVENHRIH GLLEKCTYDH EARVEILRNE THERAISDAK WQQIQQNVVP YSDAASSNEN NEVQVDPQSV
0501: EFPSEEIDAL KGRYIKRLTA VLVHHIPLFW KTAISVFSGK FAKSSQVTDS SANKAEEKVT EARYSTHSLE EVAAMIRKTI SVYEAKVHST FCDFDESCIL
0601: RPFMSDAIHE VSKACQSFET KDSAPHSAVV ALRKVQAEIT KIYIQRLCSW MRASTEGISK EETWVPVSIL ERNRSPYAIS YLPLAFRSVI VSGMEQINLM
0701: ILSVKGEAAK SEDMFAQIEE ILISVRMAFL NCFLDFAAHL EQIAADLSQS TSTREDWKNG YSDDQQEVPS ANTYGSVVDP HRRLLMVLSN IGYCKDELAS
0801: ELYNKFKYTW LQSRDNDEDS SDLQDLIMSF SGLGEKVLEH YTFAKANLIR TAATNYLLDS GIQWGSAPQV KGIRDAAVEL LHTLVAVHAE VFAGAKPLLD
0901: KILGVLIEGL VDTFLSLVEE NRTNDLSSID ANGFCQLMFE LEYFETVLNL YFTSDATASL KTLQGTVLEI AIESISEAVE TTPGHNRRPT RGSEDTVSDD
1001: RQGSSVSADD LLALTKQYSS ELLQAEMERT RLNTACFAES VPVEPTPTLP KTAYRVSMDS PSRNYRGSQS SGSPVNARPR RR
0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT
0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP
0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE
0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA
0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC
0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS
0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG
0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF
0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS
1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR
Arabidopsis Description
SEC5AExocyst complex component SEC5A [Source:UniProtKB/Swiss-Prot;Acc:Q8S3U9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.