Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400026847 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G76850.1 | PGSC0003DMT400026847 | AT1G10180.1 | 23495664 |
| AT1G76850.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT1G76850.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0072g00740.t01 | Wine grape | nucleus | 25.12 | 36.11 |
| CDY45948 | Canola | cytosol, nucleus, peroxisome | 31.4 | 13.49 |
| AT1G76850.1 | Thale cress | nucleus | 47.34 | 8.99 |
| AT1G21170.2 | Thale cress | nucleus | 47.34 | 8.92 |
| Bra003706.1-P | Field mustard | nucleus | 45.89 | 8.78 |
| CDX68084 | Canola | nucleus | 45.41 | 8.7 |
| Solyc12g056520.1.1 | Tomato | cytosol | 41.06 | 8.7 |
| CDX85974 | Canola | nucleus | 45.41 | 8.69 |
| CDY13565 | Canola | nucleus | 43.0 | 8.44 |
| KRH34989 | Soybean | endoplasmic reticulum | 43.96 | 8.37 |
| KRG91797 | Soybean | cytosol | 43.48 | 8.26 |
| Os04t0421900-01 | Rice | plasma membrane | 42.51 | 7.99 |
| TraesCS2B01G316400.1 | Wheat | nucleus | 41.06 | 7.95 |
| TraesCS2D01G298000.2 | Wheat | nucleus | 41.06 | 7.93 |
| TraesCS2A01G300100.3 | Wheat | nucleus | 41.06 | 7.9 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 40.1 | 7.49 |
| OQU81566 | Sorghum | nucleus | 39.13 | 7.38 |
| Bra008282.1-P | Field mustard | cytosol | 27.05 | 4.88 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 19.32 | 4.0 |
| Zm00001d039959_P001 | Maize | cytosol | 2.42 | 2.96 |
| Zm00001d036062_P001 | Maize | cytosol | 2.42 | 2.87 |
| PGSC0003DMT400061943 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 0.48 | 0.47 |
| CDY45950 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400027989 | EnsemblPlantsGene:PGSC0003DMG400010789 | PGSC:PGSC0003DMG400010789 | SEG:seg | UniParc:UPI000294C4D8 | UniProt:M1AQH2 |
| MapMan:35.1 | : | : | : | : | : |
Description
Exocyst complex component [Source:PGSC_GENE;Acc:PGSC0003DMG400010789]
Coordinates
chr12:-:54468631..54470052
Molecular Weight (calculated)
23107.9 Da
IEP (calculated)
6.380
GRAVY (calculated)
-1.246
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDSDEDEL LQMALQEQST GKKPSEPPPK PKPKPNSRSV GRRAGSMDAT PNRKVQQKHR KGVDEEEDDS DLEILSISSG DEDHASSKKE SKGASKRRAP
101: KAGKDDDEHW QGGEPDCWKR VDEDELRRHV RDMREARAIP ATQIKAEEEK MALAKKALQS LQSFPRGMEC IDPLRLGIVD NRTLRMISEH SSSSPTIGEL
201: DPKTRGT
101: KAGKDDDEHW QGGEPDCWKR VDEDELRRHV RDMREARAIP ATQIKAEEEK MALAKKALQS LQSFPRGMEC IDPLRLGIVD NRTLRMISEH SSSSPTIGEL
201: DPKTRGT
0001: MSSSDDLDED ELLQMALKEQ SQRDVTYQKP PSANSRKPVT NLVQQPRRQK RAAAPPSKGG AKASRKPSMD EDDESEVELL SISSGDEDEG NDRGRGGGGD
0101: GGGGRGRGGS GKERGRARKE DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF PRGMECIDPL KLGIIDNKTL
0201: RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
0301: GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF
0401: KGTLYRSMED PKIDFTSLEN TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ IQQNGVQLSD DTSSMEDNQV
0501: QVDQPLEESA RREKDALRGR YIKILTAVIV YHLPTFWKTA LSVFTGKFAK SSQVNDTSAS KAEEKAEEAR YSSHSLEEIA GMIRNTISVY EAKVQSTFHD
0601: FDESYILHPY MSDTIKEVSK ACQAFEAKES APHSAVMALR KVKVEITKIY IQRLCSWMRA STEEISKEET WIPVSILERN RSPYSISYLP LAFRSIIVSG
0701: MEQINMMILS LKGEAARSED MFAHIEEILI SVRLAFLNCF LDFAAHLEQI GADLSQRTTK RESWQNGYSN DHQEEQSINA PESVVDPHRQ LLMILSNIGY
0801: CKDELASELY NKYKYTWLQS RRNDEDISDL QDLMMSFSGL GEKVLEHYTF AKANLIRTAA TNYLLDSGIQ WGAAPPVKGI RDAAVELLHT LVAVHAEVFA
0901: GAKPLLDKIL GTLVEGLIDT FLSLLDENRS DDLSSIDANG FCQLMLELEY FETILKPYLT VDATESLKSL QGAVLEKAIE SISETVENNP GGHQRKPTRG
1001: SEDAISDDKQ SSVSPDDLLA LAQQCTSGML QLELEKTRLN SACFIETIPL DPVPPVAKAA YSRTSTDSPS RNYRESQPMG SPVQARPRRR
0101: GGGGRGRGGS GKERGRARKE DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF PRGMECIDPL KLGIIDNKTL
0201: RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
0301: GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF
0401: KGTLYRSMED PKIDFTSLEN TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ IQQNGVQLSD DTSSMEDNQV
0501: QVDQPLEESA RREKDALRGR YIKILTAVIV YHLPTFWKTA LSVFTGKFAK SSQVNDTSAS KAEEKAEEAR YSSHSLEEIA GMIRNTISVY EAKVQSTFHD
0601: FDESYILHPY MSDTIKEVSK ACQAFEAKES APHSAVMALR KVKVEITKIY IQRLCSWMRA STEEISKEET WIPVSILERN RSPYSISYLP LAFRSIIVSG
0701: MEQINMMILS LKGEAARSED MFAHIEEILI SVRLAFLNCF LDFAAHLEQI GADLSQRTTK RESWQNGYSN DHQEEQSINA PESVVDPHRQ LLMILSNIGY
0801: CKDELASELY NKYKYTWLQS RRNDEDISDL QDLMMSFSGL GEKVLEHYTF AKANLIRTAA TNYLLDSGIQ WGAAPPVKGI RDAAVELLHT LVAVHAEVFA
0901: GAKPLLDKIL GTLVEGLIDT FLSLLDENRS DDLSSIDANG FCQLMLELEY FETILKPYLT VDATESLKSL QGAVLEKAIE SISETVENNP GGHQRKPTRG
1001: SEDAISDDKQ SSVSPDDLLA LAQQCTSGML QLELEKTRLN SACFIETIPL DPVPPVAKAA YSRTSTDSPS RNYRESQPMG SPVQARPRRR
Arabidopsis Description
SEC5BExocyst complex component SEC5 [Source:TAIR;Acc:AT1G21170]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.