Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G298000.2 | Wheat | nucleus | 98.05 | 98.41 |
| TraesCS2B01G316400.1 | Wheat | nucleus | 96.0 | 96.63 |
| HORVU2Hr1G074320.5 | Barley | cytosol, plastid | 82.99 | 89.39 |
| Zm00001d051026_P001 | Maize | cytosol | 9.48 | 88.7 |
| OQU81566 | Sorghum | nucleus | 83.27 | 81.6 |
| Os04t0421900-01 | Rice | plasma membrane | 83.18 | 81.29 |
| Zm00001d025398_P005 | Maize | nucleus | 83.18 | 79.2 |
| Zm00001d003713_P006 | Maize | nucleus | 79.83 | 75.42 |
| GSMUA_Achr6P25360_001 | Banana | cytosol | 65.8 | 63.9 |
| VIT_18s0072g00720.t01 | Wine grape | cytosol, plastid | 55.48 | 61.04 |
| CDY45948 | Canola | cytosol, nucleus, peroxisome | 26.58 | 59.34 |
| Solyc12g056520.1.1 | Tomato | cytosol | 51.58 | 56.81 |
| KRH34989 | Soybean | endoplasmic reticulum | 57.16 | 56.58 |
| KRG91797 | Soybean | cytosol | 56.69 | 56.01 |
| Bra003706.1-P | Field mustard | nucleus | 56.04 | 55.73 |
| CDX68084 | Canola | nucleus | 55.85 | 55.65 |
| CDY13565 | Canola | nucleus | 54.55 | 55.64 |
| CDX85974 | Canola | nucleus | 55.85 | 55.55 |
| AT1G76850.1 | Thale cress | nucleus | 56.04 | 55.32 |
| AT1G21170.2 | Thale cress | nucleus | 55.95 | 54.78 |
| Solyc04g071350.2.1 | Tomato | nucleus | 55.39 | 53.89 |
| PGSC0003DMT400061943 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 10.13 | 50.7 |
| PGSC0003DMT400027989 | Potato | nucleus | 7.9 | 41.06 |
| VIT_18s0072g00740.t01 | Wine grape | nucleus | 5.48 | 40.97 |
| CDY45950 | Canola | cytosol | 12.36 | 37.78 |
| Bra008282.1-P | Field mustard | cytosol | 40.24 | 37.75 |
| CDY45951 | Canola | extracellular | 4.37 | 29.56 |
| CDY04603 | Canola | cytosol | 2.23 | 24.0 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G300100.3 | EnsemblPlantsGene:TraesCS2A01G300100 | GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006893 | GO:GO:0008150 | InterPro:Cullin_repeat-like_dom_sf | InterPro:EXOC2/Sec5 |
| ncoils:Coil | PANTHER:PTHR13043 | PFAM:PF15469 | SEG:seg | SUPFAM:SSF74788 | MapMan:22.6.3.3 |
Description
No Description!
Coordinates
chr2A:+:515941518..515957831
Molecular Weight (calculated)
120184.0 Da
IEP (calculated)
6.153
GRAVY (calculated)
-0.485
Length
1076 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSDSDVDEDE LLQMALQEQA ARDLSHQRPA GANKPVVNLV RPPANARGGA KARQPSRGGD EDDDSEVEML SISSGDEDGA PARERGPPPP RGGGRAGARR
0101: AASRDDADLD DAEPRSWKRV DEAELARRVR EMREARAAPS VQALDQKAAA AAAAAAARKA LTSVQTLPKG VEVLDPLGLG VMDNKSLRLI TEASMSSPVS
0201: REKSQGLDPS MREKVIYSSP HFDPKVFLSW VHKDTSAADL ESGALTLKTD LKGRTQQKKQ LVKENFDCFV SCKTTIDDIE SKLRQIEDDP EGAGTSHLYS
0301: VTQKISGVAN RAFEPLFERQ AQADKIRSVQ GMLQRFRTLF NLPSAIRGNI RKGEYDLAVR EYQKAKSIVL PSHVGILKRV LEEVEKVMHE FRGMLYKSME
0401: DPHLDLAELE NIVRLLLELE PETDPVWHYL NIQNGRIHGL FEKCTVDHEV RMEILQNKRH EKVLSDSKWR QLQQESNKSL EVDSAIGDSF QDDQLSSSFM
0501: AEEADSLRAT YIRRLSAVLI QHVPAFWRLA LSVFSGKFAK AAAGNALADS EMNAKSGANK TDDKGAEAKY TNHSLDEVAS MVCATVSVFD TKVQNTFRDF
0601: EECNILRPFM GDTIKEIAKA CQTLEGKDSS PTAVKMLHAL HSEMTKLYIL RLCSWMRVTT KEVSKHETWV TLSTLERNKS PYAISCLPLE FREITISAMD
0701: RIELMIFNLR NETAKSYDIT RQLQEIHESV RLAFLNSFRD FAGYLGTFGA ELAQNRSNKE NNHVQNGYMN GTDRESSASM DGNLHKKLLV VLSNIGYCKA
0801: ELSDQLYNKY RHIWSPIRDN DERSADMRDL VTSFSGLEDK VLDQYTFAKS NVIRNAAQNY LLDSGIHWGA APVVKGIRDA TLDLLHILVA VHAEVYSGAR
0901: PLLEKTLKIL VEGLVDIFLS LFYENKAKDL RMLDANGFCQ LMLELEYFET VLNTYFSTEA QQALKSLQES LLEKACESGS EDAASDDKQV PSVSPDDLLA
1001: LAQQHGSDLL QGELERTRLN IACFMEPTLQ SGSKTSAYSS YQAPAPHHPQ AQVSSPSFRR QQQTSSNSPI VSRRRR
0101: AASRDDADLD DAEPRSWKRV DEAELARRVR EMREARAAPS VQALDQKAAA AAAAAAARKA LTSVQTLPKG VEVLDPLGLG VMDNKSLRLI TEASMSSPVS
0201: REKSQGLDPS MREKVIYSSP HFDPKVFLSW VHKDTSAADL ESGALTLKTD LKGRTQQKKQ LVKENFDCFV SCKTTIDDIE SKLRQIEDDP EGAGTSHLYS
0301: VTQKISGVAN RAFEPLFERQ AQADKIRSVQ GMLQRFRTLF NLPSAIRGNI RKGEYDLAVR EYQKAKSIVL PSHVGILKRV LEEVEKVMHE FRGMLYKSME
0401: DPHLDLAELE NIVRLLLELE PETDPVWHYL NIQNGRIHGL FEKCTVDHEV RMEILQNKRH EKVLSDSKWR QLQQESNKSL EVDSAIGDSF QDDQLSSSFM
0501: AEEADSLRAT YIRRLSAVLI QHVPAFWRLA LSVFSGKFAK AAAGNALADS EMNAKSGANK TDDKGAEAKY TNHSLDEVAS MVCATVSVFD TKVQNTFRDF
0601: EECNILRPFM GDTIKEIAKA CQTLEGKDSS PTAVKMLHAL HSEMTKLYIL RLCSWMRVTT KEVSKHETWV TLSTLERNKS PYAISCLPLE FREITISAMD
0701: RIELMIFNLR NETAKSYDIT RQLQEIHESV RLAFLNSFRD FAGYLGTFGA ELAQNRSNKE NNHVQNGYMN GTDRESSASM DGNLHKKLLV VLSNIGYCKA
0801: ELSDQLYNKY RHIWSPIRDN DERSADMRDL VTSFSGLEDK VLDQYTFAKS NVIRNAAQNY LLDSGIHWGA APVVKGIRDA TLDLLHILVA VHAEVYSGAR
0901: PLLEKTLKIL VEGLVDIFLS LFYENKAKDL RMLDANGFCQ LMLELEYFET VLNTYFSTEA QQALKSLQES LLEKACESGS EDAASDDKQV PSVSPDDLLA
1001: LAQQHGSDLL QGELERTRLN IACFMEPTLQ SGSKTSAYSS YQAPAPHHPQ AQVSSPSFRR QQQTSSNSPI VSRRRR
0001: MSSSDDLDED ELLQMALKEQ SQRDVTYQKP PSANSRKPVT NLVQQPRRQK RAAAPPSKGG AKASRKPSMD EDDESEVELL SISSGDEDEG NDRGRGGGGD
0101: GGGGRGRGGS GKERGRARKE DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF PRGMECIDPL KLGIIDNKTL
0201: RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
0301: GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF
0401: KGTLYRSMED PKIDFTSLEN TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ IQQNGVQLSD DTSSMEDNQV
0501: QVDQPLEESA RREKDALRGR YIKILTAVIV YHLPTFWKTA LSVFTGKFAK SSQVNDTSAS KAEEKAEEAR YSSHSLEEIA GMIRNTISVY EAKVQSTFHD
0601: FDESYILHPY MSDTIKEVSK ACQAFEAKES APHSAVMALR KVKVEITKIY IQRLCSWMRA STEEISKEET WIPVSILERN RSPYSISYLP LAFRSIIVSG
0701: MEQINMMILS LKGEAARSED MFAHIEEILI SVRLAFLNCF LDFAAHLEQI GADLSQRTTK RESWQNGYSN DHQEEQSINA PESVVDPHRQ LLMILSNIGY
0801: CKDELASELY NKYKYTWLQS RRNDEDISDL QDLMMSFSGL GEKVLEHYTF AKANLIRTAA TNYLLDSGIQ WGAAPPVKGI RDAAVELLHT LVAVHAEVFA
0901: GAKPLLDKIL GTLVEGLIDT FLSLLDENRS DDLSSIDANG FCQLMLELEY FETILKPYLT VDATESLKSL QGAVLEKAIE SISETVENNP GGHQRKPTRG
1001: SEDAISDDKQ SSVSPDDLLA LAQQCTSGML QLELEKTRLN SACFIETIPL DPVPPVAKAA YSRTSTDSPS RNYRESQPMG SPVQARPRRR
0101: GGGGRGRGGS GKERGRARKE DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF PRGMECIDPL KLGIIDNKTL
0201: RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
0301: GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF
0401: KGTLYRSMED PKIDFTSLEN TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ IQQNGVQLSD DTSSMEDNQV
0501: QVDQPLEESA RREKDALRGR YIKILTAVIV YHLPTFWKTA LSVFTGKFAK SSQVNDTSAS KAEEKAEEAR YSSHSLEEIA GMIRNTISVY EAKVQSTFHD
0601: FDESYILHPY MSDTIKEVSK ACQAFEAKES APHSAVMALR KVKVEITKIY IQRLCSWMRA STEEISKEET WIPVSILERN RSPYSISYLP LAFRSIIVSG
0701: MEQINMMILS LKGEAARSED MFAHIEEILI SVRLAFLNCF LDFAAHLEQI GADLSQRTTK RESWQNGYSN DHQEEQSINA PESVVDPHRQ LLMILSNIGY
0801: CKDELASELY NKYKYTWLQS RRNDEDISDL QDLMMSFSGL GEKVLEHYTF AKANLIRTAA TNYLLDSGIQ WGAAPPVKGI RDAAVELLHT LVAVHAEVFA
0901: GAKPLLDKIL GTLVEGLIDT FLSLLDENRS DDLSSIDANG FCQLMLELEY FETILKPYLT VDATESLKSL QGAVLEKAIE SISETVENNP GGHQRKPTRG
1001: SEDAISDDKQ SSVSPDDLLA LAQQCTSGML QLELEKTRLN SACFIETIPL DPVPPVAKAA YSRTSTDSPS RNYRESQPMG SPVQARPRRR
Arabidopsis Description
SEC5BExocyst complex component SEC5 [Source:TAIR;Acc:AT1G21170]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.