Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G270200.1 | Wheat | plastid | 96.71 | 96.33 |
| TraesCS3A01G270400.1 | Wheat | plastid | 94.19 | 77.27 |
| HORVU3Hr1G062030.1 | Barley | nucleus, plastid | 89.34 | 74.24 |
| Os01t0675000-01 | Rice | mitochondrion | 74.22 | 69.13 |
| KXG33101 | Sorghum | mitochondrion | 68.6 | 63.33 |
| Zm00001d043889_P001 | Maize | mitochondrion | 69.38 | 59.17 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 50.39 | 55.91 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 56.59 | 51.68 |
| Bra021162.1-P | Field mustard | nucleus | 42.44 | 50.46 |
| CDY45633 | Canola | nucleus | 50.0 | 49.33 |
| Bra018956.1-P | Field mustard | nucleus | 50.78 | 48.88 |
| AT1G52240.1 | Thale cress | nucleus | 51.16 | 48.62 |
| Bra030396.1-P | Field mustard | nucleus | 50.19 | 48.23 |
| CDX87879 | Canola | nucleus | 50.0 | 46.32 |
| Bra027189.1-P | Field mustard | nucleus | 46.32 | 45.09 |
| CDX97723 | Canola | nucleus | 46.32 | 44.92 |
| CDY30136 | Canola | nucleus | 46.71 | 43.82 |
| CDY67259 | Canola | nucleus | 50.78 | 43.59 |
| CDY52982 | Canola | nucleus | 50.78 | 43.59 |
| AT3G16130.1 | Thale cress | nucleus | 44.96 | 43.12 |
| CDY28381 | Canola | nucleus | 46.9 | 40.4 |
| TraesCS5B01G339200.1 | Wheat | cytosol | 37.6 | 40.17 |
| CDY20181 | Canola | nucleus | 46.51 | 39.54 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 35.08 | 38.92 |
| TraesCS1B01G222700.1 | Wheat | plastid | 35.08 | 37.87 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 38.57 | 36.92 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 33.14 | 36.31 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 37.98 | 34.63 |
| TraesCS6B01G298000.1 | Wheat | cytosol | 31.2 | 29.65 |
| Bra021161.1-P | Field mustard | nucleus | 2.33 | 9.02 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G304200.1 | EnsemblPlantsGene:TraesCS3B01G304200 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF10 | PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : |
Description
No Description!
Coordinates
chr3B:-:488535427..488537668
Molecular Weight (calculated)
57654.6 Da
IEP (calculated)
7.977
GRAVY (calculated)
-0.507
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPSPSLSSS FSSSSRLLRS SSLSSQCSTS GRRSMDEEAE AVVAPLPPMQ KRVLSRSHGS RAAPGRQLPP KNVVRDAGPP SEMDLVKERF AKLLLGEDMS
101: GTGKGVSSAL ALSNSITNLA ASVFGEQRRL EPMSADRKAR WKKEIGWLLS VTDHIVEFVP LQQVSEDGTS MEVMGTQLRR DILMNIPALR KLDAMLLGYL
201: DNFKDEQEYW YVSKNANESE KGDAPRDGEK WWIPTVRVPP EGLSDQSRKW LQHQKDLVGQ VLKAAMAINA NVLAQMEIPE EYIEALPKNG RESLGDSIYR
301: TITDDYFDPN GLLDSVDLST EHKIVDLKDR IEASVVIWQR KLCNKLSWGP GVSLEKREQF EERAQTVLLI LKHKFPGSAQ SSLDISKIQY NKDVGFAILE
401: SYSRALESLA FAVLSRIEDV LYADNVAQDP RRSKSRRRPR LEDDITESLV VDATEATSAK ASDSFCWQEL EDRSLDSRGG KLKKIPRISR RKSMHVDKVE
501: MNVCGVGAGS RSFSHR
101: GTGKGVSSAL ALSNSITNLA ASVFGEQRRL EPMSADRKAR WKKEIGWLLS VTDHIVEFVP LQQVSEDGTS MEVMGTQLRR DILMNIPALR KLDAMLLGYL
201: DNFKDEQEYW YVSKNANESE KGDAPRDGEK WWIPTVRVPP EGLSDQSRKW LQHQKDLVGQ VLKAAMAINA NVLAQMEIPE EYIEALPKNG RESLGDSIYR
301: TITDDYFDPN GLLDSVDLST EHKIVDLKDR IEASVVIWQR KLCNKLSWGP GVSLEKREQF EERAQTVLLI LKHKFPGSAQ SSLDISKIQY NKDVGFAILE
401: SYSRALESLA FAVLSRIEDV LYADNVAQDP RRSKSRRRPR LEDDITESLV VDATEATSAK ASDSFCWQEL EDRSLDSRGG KLKKIPRISR RKSMHVDKVE
501: MNVCGVGAGS RSFSHR
001: MVKASEKEHE KYKPKLFDLE NVKKKNSSSR HFKRWNSDSA LRIEDPDIDD GTVFKKTATS SIQPILPVLA MDEQPQPREA TDEESQKDSE LEQMKDKFAK
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
Arabidopsis Description
ATROPGEF13RHO guanyl-nucleotide exchange factor 13 [Source:TAIR;Acc:AT3G16130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.