Factsheet for Os01t0675000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201000-01
Os01t0256400-01
Os01t0950800-01
Os02t0232400-01
Os02t0269200-01
Os02t0506100-00
Os03t0309800-02
Os04t0382800-00
Os04t0589200-01
Os04t0654700-02
Os06t0150100-01
Os06t0275000-01
Os06t0492700-00
Os08t0453800-00
Os10t0580500-00
Os12t0182200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	Os04t0654700-02	AT1G22920.1	21798944
AT1G52240.1	Os12t0182200-01	AT1G34430.1	21798944
AT1G52240.1	Os01t0950800-01	AT1G34570.1	21798944
AT1G52240.1	Os10t0580500-00	AT1G34570.1	21798944
AT1G52240.1	Os02t0232400-01	AT2G42790.1	21798944
AT1G52240.1	Os03t0309800-02	AT3G06430.1	21798944
AT1G52240.1	Os02t0269200-01	AT3G16120.1	21798944
AT1G52240.1	Os04t0589200-01	AT3G17668.1	21798944
AT1G52240.1	Os01t0256400-01	AT4G15930.1	21798944
AT1G52240.1	Os06t0492700-00	AT4G15930.1	21798944
AT1G52240.1	Os06t0150100-01	AT4G32960.1	21798944
AT1G52240.1	Os02t0506100-00	AT5G22310.1	21798944
AT1G52240.1	Os04t0382800-00	AT5G22310.1	21798944
AT1G52240.1	Os06t0275000-01	AT5G57660.1	21798944
AT1G52240.1	Os01t0201000-01	AT5G64960.1	21798944
AT1G52240.1	Os08t0453800-00	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G270200.1	Wheat	plastid	69.49	74.32
TraesCS3B01G304200.1	Wheat	plastid	69.13	74.22
KXG33101	Sorghum	mitochondrion	72.2	71.56
Zm00001d043889_P001	Maize	mitochondrion	72.02	65.95
HORVU3Hr1G062030.1	Barley	nucleus, plastid	71.84	64.09
TraesCS3A01G270400.1	Wheat	plastid	69.49	61.21
Os05t0560100-01	Rice	mitochondrion	55.05	53.6
Os02t0272300-01	Rice	plasma membrane	49.46	53.41
Os01t0760300-01	Rice	plasma membrane	48.92	52.02
Bra021162.1-P	Field mustard	nucleus	40.25	51.38
Bra018956.1-P	Field mustard	nucleus	47.83	49.44
CDY45633	Canola	nucleus	46.57	49.33
AT1G52240.1	Thale cress	nucleus	47.47	48.43
Bra030396.1-P	Field mustard	nucleus	46.93	48.42
CDX87879	Canola	nucleus	46.57	46.32
Bra027189.1-P	Field mustard	nucleus	44.04	46.04
CDX97723	Canola	nucleus	44.04	45.86
CDY30136	Canola	nucleus	44.4	44.73
AT3G16130.1	Thale cress	nucleus	43.14	44.42
CDY67259	Canola	nucleus	48.01	44.26
CDY52982	Canola	nucleus	48.01	44.26
CDY28381	Canola	nucleus	44.77	41.4
CDY20181	Canola	nucleus	44.4	40.53
Os07t0481100-01	Rice	cytosol	31.77	38.26
Os10t0550300-00	Rice	plastid	33.03	38.2
Os01t0849100-01	Rice	cytosol	36.64	37.18
Os04t0559100-00	Rice	cytosol	12.09	36.81
Os09t0544800-01	Rice	nucleus	36.64	36.19
Os05t0454200-01	Rice	nucleus	34.3	33.45
Os02t0702600-02	Rice	cytosol	30.87	31.49
Bra021161.1-P	Field mustard	nucleus	2.71	11.28

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:4325510	ProteinID:BAF05758.1	ProteinID:BAS73650.1
ProteinID:EEE55168.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	InterPro:IPR005512	EnsemblPlantsGene:Os01g0675000	EnsemblPlants:Os01t0675000-01	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	UniProt:Q0JKH0	InterPro:RopGEF	UniParc:UPI0000DD8C6C
RefSeq:XP_015635291.1	SEG:seg	:	:	:	:

Description

Rop nucleotide exchanger, PRONE domain containing protein. (Os01t0675000-01)

Coordinates

chr1:+:27742228..27745141

Molecular Weight (calculated)

61666.2 Da

IEP (calculated)

6.580

GRAVY (calculated)

-0.503

Length

554 amino acids

Sequence
(BLAST)

001: MVRRHLLRGH SLDRFLPIRS LIMSSSSSFS SSSPSPPPPS SSSSRGSSSG RWCGVSVAEE DEDDAAVSAT TTPPLPPLQK RVLSRSHGSK AKPLGGSVDH
101: LPPVVPPSSK NVRDSGPPSE IDLVKEKFAK LLLGEDMSGT GKGVSSALAL SNAITNLAAS VFGEQRRLEP MSADRRARWN KEIDWLLSVT DHIVEFVPSQ
201: QASTDGTSME VMGTQQRRDL LINIPALRKL DAMLLEYLDN FKDEQEFWYV KKDADEGEKG DAPRQGDKWW IPTVRVPPEG LPDASKKWIL HQKDLVGQVL
301: KAAMAINADV LTEMEIPGEY IETLPKNGRS SLGDSIYKII TDDHFDPNEL LSSVDLSTEH KIVDLKDRIE ASVVIWQRKI SNKLSWGPGV SLEKREQFEE
401: RAQTVLLILK HQFPGVPQSS LDISKIQYNK DVGYAILESY SRTLESLAFA VLSRIEDVLH ADAIARDPKR TKSRRRPSLV DIPEIIDNAL EEEETVNSID
501: ANSQVTNNSI HWQEQEHEDK GARLRKVHRM VTKKLLHIEK VDNLGGGLKS FSHR

Best Arabidopsis Sequence Match ( AT4G13240.1 )
(BLAST)

001: MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH

Arabidopsis Description

ROPGEF9Rop guanine nucleotide exchange factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.