Factsheet for Bra027189.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97723	Canola	nucleus	98.11	97.74
Bra021162.1-P	Field mustard	nucleus	69.06	84.33
AT3G16130.1	Thale cress	nucleus	77.92	76.77
Bra018956.1-P	Field mustard	nucleus	63.58	62.87
Bra030396.1-P	Field mustard	nucleus	63.4	62.57
Bra003536.1-P	Field mustard	nucleus	51.89	53.61
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	28.49	52.61
Bra013249.1-P	Field mustard	nucleus, plastid	50.19	51.35
TraesCS3D01G296400.1	Wheat	cytosol	44.53	51.08
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	48.3	50.69
TraesCS3B01G331000.1	Wheat	nucleus	43.96	50.11
Bra015068.1-P	Field mustard	nucleus	49.25	50.1
HORVU3Hr1G073200.1	Barley	nucleus	44.34	49.37
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	43.4	48.94
Zm00001d043383_P001	Maize	nucleus	46.98	47.61
OQU87589	Sorghum	nucleus	46.23	47.39
Os01t0760300-01	Rice	plasma membrane	45.85	46.64
Bra020048.1-P	Field mustard	nucleus	43.4	46.56
TraesCS3B01G304200.1	Wheat	plastid	45.09	46.32
TraesCS3D01G270200.1	Wheat	plastid	44.91	45.95
Zm00001d038989_P002	Maize	nucleus, plastid	44.15	45.88
Bra006510.1-P	Field mustard	cytosol	41.89	45.49
EES19937	Sorghum	mitochondrion	46.23	44.55
Os05t0560100-01	Rice	mitochondrion	47.36	44.11
Os01t0675000-01	Rice	mitochondrion	46.04	44.04
TraesCS1A01G392100.1	Wheat	plastid	46.42	43.85
TraesCS1D01G400200.2	Wheat	plastid	46.42	43.54
Bra002246.1-P	Field mustard	plastid	42.45	43.52
TraesCS1B01G420200.1	Wheat	nucleus, plastid	46.04	43.19
KXG33101	Sorghum	mitochondrion	45.28	42.93
Zm00001d009549_P002	Maize	mitochondrion	44.34	42.57
Zm00001d043889_P001	Maize	mitochondrion	44.53	39.01
TraesCS3A01G270400.1	Wheat	plastid	45.85	38.63
HORVU3Hr1G062030.1	Barley	nucleus, plastid	44.91	38.33
Bra021161.1-P	Field mustard	nucleus	9.43	37.59
Bra004945.1-P	Field mustard	nucleus, plastid	31.89	36.74
Bra037342.1-P	Field mustard	cytosol	32.64	36.27
Bra000971.1-P	Field mustard	nucleus	32.45	35.98
Bra009621.1-P	Field mustard	nucleus	37.92	35.89
HORVU1Hr1G086590.2	Barley	plastid	45.47	35.76
Bra015010.1-P	Field mustard	cytosol	36.79	35.65
Bra009152.1-P	Field mustard	cytosol, plastid	37.17	33.11
Bra007183.1-P	Field mustard	cytosol, plastid	34.72	32.22
Bra005323.1-P	Field mustard	nucleus	29.62	31.34
Bra005322.1-P	Field mustard	nucleus	21.13	28.57

Protein Annotations

EnsemblPlants:Bra027189.1	EnsemblPlants:Bra027189.1-P	EnsemblPlantsGene:Bra027189	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	UniParc:UPI000254792A	UniProt:M4EEH7	MapMan:27.4.3.1	:	:

Description

AT3G16130 (E=7e-204) ATROPGEF13, ROPGEF13 | ROPGEF13; Rho guanyl-nucleotide exchange factor

Coordinates

chrA05:-:19599734..19601858

Molecular Weight (calculated)

60456.2 Da

IEP (calculated)

5.544

GRAVY (calculated)

-0.575

Length

530 amino acids

Sequence
(BLAST)

001: MVKAVEREDK ESYKFGLYDF ENMKEKNVSS RNVKRWNSSS ALRTEDPDID DDTVFKRTAV SSVLPMLPFR PPQTCEATER EQMKERFAKL LLGEDMSGGG
101: KGVSSALALS NAVTNLSASA FGEQRRLEPM SEDRKERWRR EMGWLLSVTD HIVEFSPTQQ TNKDGSSIEV MTTRQRTDLV SNIPALKNLD VMLTDCLDKF
201: KDQDEFYYVT TDSPEHLNSN STRNNDKWWL PTVKVPPNGL SETSKRFLLS QKECVSQVLK SALAINAEVL SQMETPESYI DSLPKNGKAS LGDMIYRMIT
301: LDMFDVEKFL LEMDLSSEHK ILDLQDKIEA SVVIWKRKIV QKDNNKSSSP FSTNLSMEKR QLLEERAETI LLLIKLRFPG ISQSTLDISK IQFNKDIGLA
401: IMESYSRVLE SLAHTVLSRI EDVLVADQLT QDPESLLCKR YIVKETESPK KEEERNFCLL EERPIKQKAP ISLSEVMQWN MDDKNDAPLK DSGKKLLTRV
501: STMIMANNKK STSYLESLGT TRSPRAGQYS

Best Arabidopsis Sequence Match ( AT3G16130.1 )
(BLAST)

001: MVKASEKEHE KYKPKLFDLE NVKKKNSSSR HFKRWNSDSA LRIEDPDIDD GTVFKKTATS SIQPILPVLA MDEQPQPREA TDEESQKDSE LEQMKDKFAK
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS

Arabidopsis Description

ATROPGEF13RHO guanyl-nucleotide exchange factor 13 [Source:TAIR;Acc:AT3G16130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.