Factsheet for HORVU1Hr1G086590.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU0Hr1G030280.2
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G069400.8
HORVU2Hr1G105520.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G073190.1
HORVU3Hr1G107330.1
HORVU3Hr1G113750.1
HORVU4Hr1G024360.2
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU5Hr1G038090.3
HORVU5Hr1G099820.5
HORVU6Hr1G023630.1
HORVU7Hr1G009930.1
HORVU7Hr1G011400.2
HORVU7Hr1G021910.1
HORVU7Hr1G078010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	HORVU0Hr1G018470.1	AT1G22920.1	21798944
AT1G52240.1	HORVU0Hr1G025410.1	AT1G22920.1	21798944
AT1G52240.1	HORVU1Hr1G008160.1	AT1G22920.1	21798944
AT1G52240.1	HORVU2Hr1G056160.5	AT1G22920.1	21798944
AT1G52240.1	HORVU2Hr1G067660.1	AT1G22920.1	21798944
AT1G52240.1	HORVU2Hr1G112000.1	AT1G22920.1	21798944
AT1G52240.1	HORVU3Hr1G021300.1	AT1G22920.1	21798944
AT1G52240.1	HORVU3Hr1G054660.1	AT1G22920.1	21798944
AT1G52240.1	HORVU3Hr1G113750.1	AT1G22920.1	21798944
AT1G52240.1	HORVU4Hr1G047410.2	AT1G22920.1	21798944
AT1G52240.1	HORVU4Hr1G048730.1	AT1G22920.1	21798944
AT1G52240.1	HORVU6Hr1G023630.1	AT1G22920.1	21798944
AT1G52240.1	HORVU7Hr1G078010.1	AT1G22920.1	21798944
AT1G52240.1	HORVU5Hr1G038090.3	AT1G34430.1	21798944
AT1G52240.1	HORVU3Hr1G107330.1	AT1G34570.1	21798944
AT1G52240.1	HORVU7Hr1G009930.1	AT1G34570.1	21798944
AT1G52240.1	HORVU0Hr1G030280.2	AT2G42790.1	21798944
AT1G52240.1	HORVU5Hr1G099820.5	AT2G42790.1	21798944
AT1G52240.1	HORVU4Hr1G024360.2	AT3G06430.1	21798944
AT1G52240.1	HORVU3Hr1G073190.1	AT3G16120.1	21798944
AT1G52240.1	HORVU7Hr1G011400.2	AT3G16120.1	21798944
AT1G52240.1	HORVU2Hr1G105520.1	AT3G17668.1	21798944
AT1G52240.1	HORVU7Hr1G021910.1	AT4G32960.1	21798944
AT1G52240.1	HORVU2Hr1G069400.8	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G400200.2	Wheat	plastid	78.49	93.63
TraesCS1B01G420200.1	Wheat	nucleus, plastid	77.89	92.92
TraesCS1A01G392100.1	Wheat	plastid	77.0	92.51
EES19937	Sorghum	mitochondrion	57.86	70.91
Os05t0560100-01	Rice	mitochondrion	59.05	69.95
Zm00001d038989_P002	Maize	nucleus, plastid	51.04	67.45
Zm00001d009549_P002	Maize	mitochondrion	54.45	66.49
HORVU3Hr1G073200.1	Barley	nucleus	36.5	51.68
HORVU6Hr1G050860.4	Barley	mitochondrion	38.28	51.29
Bra018956.1-P	Field mustard	nucleus	39.61	49.81
HORVU3Hr1G062030.1	Barley	nucleus, plastid	45.85	49.76
Bra021162.1-P	Field mustard	nucleus	31.45	48.85
CDY45633	Canola	nucleus	37.83	48.76
AT1G52240.1	Thale cress	nucleus	39.02	48.43
Bra030396.1-P	Field mustard	nucleus	38.43	48.23
CDX87879	Canola	nucleus	38.43	46.5
Bra027189.1-P	Field mustard	nucleus	35.76	45.47
CDX97723	Canola	nucleus	35.61	45.11
CDY52982	Canola	nucleus	40.21	45.09
CDY67259	Canola	nucleus	40.06	44.93
CDY30136	Canola	nucleus	36.5	44.73
AT3G16130.1	Thale cress	nucleus	35.61	44.61
CDY28381	Canola	nucleus	36.05	40.57
CDY20181	Canola	nucleus	35.46	39.37
HORVU6Hr1G092860.2	Barley	nucleus	26.11	38.51
HORVU1Hr1G053350.4	Barley	nucleus, plastid	26.11	36.82
HORVU5Hr1G085510.1	Barley	nucleus, plastid	30.12	35.87
HORVU1Hr1G072910.3	Barley	cytosol	29.82	35.64
HORVU2Hr1G096430.13	Barley	mitochondrion	27.15	34.46
HORVU3Hr1G085680.2	Barley	plastid	30.12	31.09
HORVU6Hr1G068660.4	Barley	nucleus	22.4	24.96
HORVU6Hr1G041610.18	Barley	plastid	23.29	20.93
Bra021161.1-P	Field mustard	nucleus	3.12	15.79

Protein Annotations

EnsemblPlants:HORVU1Hr1G086590.2	EnsemblPlantsGene:HORVU1Hr1G086590	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF3	PFAM:PF03759	PFscan:PS51334
SEG:seg	UniParc:UPI000B46D96B	UniProt:A0A287GLE2	MapMan:27.4.3.1	:	:

Description

No Description!

Coordinates

chrchr1H:+:537709403..537712571

Molecular Weight (calculated)

74002.4 Da

IEP (calculated)

9.099

GRAVY (calculated)

-0.680

Length

674 amino acids

Sequence
(BLAST)

001: REGTSPTWTR RTDTHKTDPF PAAPAARATH PIPSHPTPPF LSSPPSQNRP PPESSQPRPR SRPRPRPRAS QPATGHPSSH LSLSRARGRE VGRADGRTAG
101: PRASACVRDA VVTGGDERVM APPFLKTGHG RDSRFSFRRR KSGKASSTPS SPLSSVSSSA SSEDVLLDPG SPTMDPSAKT QTLPCARRAL SRSSCGSRGK
201: LSVDLIPPPL AGGPSDAPRS STSAAPPPKP APRPEGPPSD ADMVKEKFSK LLLGEDMSGT GKGVSSALAL SNAITNLAAS VFGESRRLQP MAPEQKARWT
301: KEIDWLLSVA DFIVEFVPSR QEAEDGSTME IMITQQRRDL LMNIPALRKL DGMLLDYLDS FSDKQEFWYV KKNDNESENG DTAEQSDKWW LPTVKVPPDG
401: LSDSTRRWLQ HQKELVNQVL KATMAINANV LMEMDVPEAY METLPKNGKS TLGDSMYKLI TDDYFDPEEL IATVDLSNEY NIVDLKNRIE ASVVIWQKKM
501: QRDGKSWGHG VSHEKRGRFE GRAENVLLLL KHRFPGISQS ALDISKIQYN RDVGSAILES YSRTLESLAY TVMSRIEDVL HADSLTQDPK KGDSMRMPSL
601: TSDDTDTVVQ EAKDEMGRLG RMEPVNSTLF DYVGPRDGSI ETMILESQDP QGKKLSKVSQ IGTKRYSYLD KLXX

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.