Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G330900.1 | Wheat | cytosol | 93.27 | 97.98 |
| TraesCS3A01G305600.1 | Wheat | cytosol | 92.31 | 96.97 |
| TraesCS3D01G296300.1 | Wheat | cytosol | 92.31 | 96.97 |
| TraesCS1D01G203800.1 | Wheat | cytosol | 91.35 | 95.96 |
| TraesCS2B01G143000.1 | Wheat | cytosol | 87.5 | 91.92 |
| TraesCS1B01G110900.1 | Wheat | cytosol | 87.5 | 91.92 |
| TraesCS2B01G427400.1 | Wheat | cytosol | 86.54 | 90.91 |
| TraesCS2A01G245600.1 | Wheat | cytosol | 86.54 | 90.91 |
| TraesCS5B01G340700.1 | Wheat | cytosol | 84.62 | 88.89 |
| TraesCS7A01G284100.1 | Wheat | cytosol, plastid | 74.04 | 88.51 |
| KXG33416 | Sorghum | cytosol | 78.85 | 88.17 |
| Zm00001d043386_P001 | Maize | cytosol | 76.92 | 86.02 |
| CDY02551 | Canola | cytosol | 66.35 | 73.4 |
| Solyc12g044240.1.1 | Tomato | cytosol | 66.35 | 73.4 |
| Bra018957.1-P | Field mustard | cytosol | 66.35 | 73.4 |
| Bra014318.1-P | Field mustard | cytosol | 66.35 | 73.4 |
| AT1G52245.1 | Thale cress | cytosol | 65.38 | 72.34 |
| PGSC0003DMT400019607 | Potato | cytosol | 65.38 | 72.34 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 64.42 | 72.04 |
| KRH09878 | Soybean | cytosol | 65.38 | 71.58 |
| KRH23441 | Soybean | cytosol | 64.42 | 70.53 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 63.46 | 69.47 |
| Solyc03g120690.2.1 | Tomato | cytosol | 62.5 | 69.15 |
| AT3G16120.1 | Thale cress | cytosol | 61.54 | 68.82 |
| KRH60274 | Soybean | cytosol | 61.54 | 68.82 |
| CDY30135 | Canola | cytosol | 61.54 | 68.82 |
| CDX97722 | Canola | cytosol | 61.54 | 68.82 |
| Bra027190.1-P | Field mustard | cytosol | 61.54 | 68.82 |
| PGSC0003DMT400006527 | Potato | cytosol | 61.54 | 68.09 |
| KRH41561 | Soybean | cytosol | 60.58 | 67.74 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 60.58 | 65.62 |
| CDY47528 | Canola | cytosol | 58.65 | 46.92 |
| HORVU7Hr1G011400.2 | Barley | plastid | 65.38 | 41.98 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.1 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0030286 |
| EnsemblPlantsGene:HORVU3Hr1G073190 | EnsemblPlants:HORVU3Hr1G073190.1 | InterPro:IPR037177 | UniProt:M0W7F9 | PFAM:PF01221 | PANTHER:PTHR11886 |
| PANTHER:PTHR11886:SF47 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI000295717E | : | : |
Description
No Description!
Coordinates
chrchr3H:+:552681371..552682259
Molecular Weight (calculated)
11566.9 Da
IEP (calculated)
6.228
GRAVY (calculated)
-0.157
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGKATVED TDMPAKMQLQ ATSAASRALD RFDVLDCRSI AAHIKKEFDT AHGPGWQCVV GCSFGCYFTH SKGSFIYFKL ESLRFLVFKG MSDDQEQPLP
101: LPPC
101: LPPC
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.