Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G143000.1 | Wheat | cytosol | 97.98 | 97.98 |
| TraesCS2B01G427400.1 | Wheat | cytosol | 96.97 | 96.97 |
| TraesCS1D01G203800.1 | Wheat | cytosol | 95.96 | 95.96 |
| TraesCS5B01G340700.1 | Wheat | cytosol | 94.95 | 94.95 |
| TraesCS3B01G330900.1 | Wheat | cytosol | 93.94 | 93.94 |
| TraesCS2A01G245600.1 | Wheat | cytosol | 92.93 | 92.93 |
| TraesCS7A01G284100.1 | Wheat | cytosol, plastid | 79.8 | 90.8 |
| HORVU3Hr1G073190.1 | Barley | cytosol | 91.92 | 87.5 |
| Zm00001d043386_P001 | Maize | cytosol | 78.79 | 83.87 |
| KXG33416 | Sorghum | cytosol | 78.79 | 83.87 |
| Bra014318.1-P | Field mustard | cytosol | 67.68 | 71.28 |
| Bra018957.1-P | Field mustard | cytosol | 67.68 | 71.28 |
| CDY02551 | Canola | cytosol | 67.68 | 71.28 |
| Solyc12g044240.1.1 | Tomato | cytosol | 66.67 | 70.21 |
| AT1G52245.1 | Thale cress | cytosol | 66.67 | 70.21 |
| PGSC0003DMT400019607 | Potato | cytosol | 65.66 | 69.15 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 63.64 | 67.74 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 64.65 | 67.37 |
| AT3G16120.1 | Thale cress | cytosol | 62.63 | 66.67 |
| Bra027190.1-P | Field mustard | cytosol | 62.63 | 66.67 |
| CDX97722 | Canola | cytosol | 62.63 | 66.67 |
| CDY30135 | Canola | cytosol | 62.63 | 66.67 |
| KRH09878 | Soybean | cytosol | 63.64 | 66.32 |
| Solyc03g120690.2.1 | Tomato | cytosol | 62.63 | 65.96 |
| KRH60274 | Soybean | cytosol | 61.62 | 65.59 |
| KRH41561 | Soybean | cytosol | 61.62 | 65.59 |
| KRH23441 | Soybean | cytosol | 62.63 | 65.26 |
| PGSC0003DMT400006527 | Potato | cytosol | 61.62 | 64.89 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 61.62 | 63.54 |
| CDY47528 | Canola | cytosol | 59.6 | 45.38 |
| TraesCS3B01G205000.1 | Wheat | cytosol | 34.34 | 24.11 |
| TraesCS6B01G325300.1 | Wheat | cytosol | 32.32 | 21.62 |
| TraesCS2B01G344700.1 | Wheat | cytosol | 35.35 | 20.0 |
| TraesCS6B01G224400.1 | Wheat | cytosol | 33.33 | 15.94 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G110900.1 | EnsemblPlantsGene:TraesCS1B01G110900 | Gene3D:3.30.740.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030286 | InterPro:DLC_sf |
| InterPro:Dynein_light_chain_typ-1/2 | InterPro:IPR037177 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF47 | PFAM:PF01221 | SMART:SM01375 |
| SUPFAM:SSF54648 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:126922401..126922868
Molecular Weight (calculated)
11219.6 Da
IEP (calculated)
6.749
GRAVY (calculated)
-0.113
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MLEGKATVED TDMPTKMQLQ ATSAASRALD RFDVLDCRSI TTHIKKEFDT IHGPGWQCVV GCNFGCYFTH SKGSFIYFKF ELLRFLVFKG MADEQPLPC
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.