Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G059700.2 | Wheat | nucleus | 87.53 | 90.96 |
| TraesCS1B01G076900.1 | Wheat | nucleus | 70.54 | 82.81 |
| HORVU1Hr1G011900.6 | Barley | nucleus | 61.76 | 80.83 |
| Os05t0121800-01 | Rice | nucleus | 28.87 | 56.28 |
| Zm00001d021610_P003 | Maize | cytosol | 27.11 | 44.88 |
| KXG36299 | Sorghum | nucleus | 27.87 | 44.46 |
| Zm00001d006473_P001 | Maize | cytosol | 28.2 | 43.48 |
| GSMUA_Achr5P07300_001 | Banana | cytosol | 4.27 | 36.69 |
| GSMUA_Achr10P... | Banana | cytosol | 10.79 | 28.73 |
| AT3G53320.1 | Thale cress | nucleus | 10.88 | 23.51 |
| CDX78168 | Canola | nucleus | 9.79 | 21.63 |
| CDX73561 | Canola | nucleus | 9.79 | 21.63 |
| Bra006990.1-P | Field mustard | nucleus | 9.79 | 21.63 |
| AT2G37070.1 | Thale cress | nucleus | 8.7 | 19.62 |
| KRG95926 | Soybean | nucleus | 11.21 | 18.38 |
| CDY18461 | Canola | endoplasmic reticulum | 6.61 | 18.29 |
| VIT_13s0019g03630.t01 | Wine grape | nucleus | 11.72 | 17.93 |
| Bra017208.1-P | Field mustard | nucleus | 6.78 | 17.76 |
| VIT_08s0040g02430.t01 | Wine grape | nucleus | 10.21 | 17.71 |
| KRH67641 | Soybean | nucleus | 11.13 | 17.59 |
| PGSC0003DMT400004371 | Potato | nucleus | 15.15 | 13.92 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G058600.1 | EnsemblPlantsGene:TraesCS1A01G058600 | PANTHER:PTHR33737 | PANTHER:PTHR33737:SF6 | SEG:seg | MapMan:20.1.5.1.2 |
Description
No Description!
Coordinates
chr1A:+:39402468..39408335
Molecular Weight (calculated)
124939.0 Da
IEP (calculated)
5.175
GRAVY (calculated)
-0.490
Length
1195 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDALSLIDVS GEEDDFLLDL ASPPQHPDPP PRAAPGASVV AADSEQPAVG SPPGGQVVDP AEQAPERAQS PKRTKPKGGV NLRKSLAWDK AFFTSEGVLD
0101: TEELGIVNST FRKSQGSRLL PGIAEEMRRS MESTTSSLES ESFVLESLET ELFDNVRASI QRTLGKPDKA PSVASGSSKT PRATAKAPPV TARKGVDRIP
0201: QTQSKIKPPA SISNGSVGGS RQRPQVTLKE PAAARVAVSK AAEAKPSSKP PRALPRVATM RAPTNTAVTS GIADKRSSTG GVVNRQAVAK SANSSASVPS
0301: RPGGGTKNNS TSKSGALSSA ASPSLRSAPM AGGKTKSPTL ISKNRTAQRI PIRSSRSDIS KVDPARASRN KSHSEGASPT ISPSSSVDSM SSVISGVSTA
0401: STVGRASHTS ETYSTRSSSL SPSNRKSNDH PPTTLRRPVI VTEGQASGAF ADNVKSNVDT STQGNGFKPS GLRRPTPKIG YFDAEKSVEQ KAGARAQLQP
0501: TKVLFSPLAT QNSWIPSTPK TIPAALTFEQ EEPKSRAAAP SQTKSRAAAP SLPLKVAQTE VKPSKVTEPE ASQAKVSTPL PLRVAQTEVK QSKVTEPEAS
0601: QAKASTPLPL RVAQTEVKPS KVTEHDASQT KASASLPIRV AQAEVDPLKV SEHEASQTEA LPILSPRVAQ TEVEPAKVAE HDIFGTKGPS MPLIRAAQTE
0701: IETPKVSEHE THMQETGPLV VAMDSAEEGI PALHQNVQAN GEVESSKVSE LEAHVNETGL LLAMGIAEEG FPALHENVQV NGEGESSKVS EHEAHMQETG
0801: LLGAMDIAEE GFPALHENVQ VNGEGESSKV SEHEAHMQET GLLVAMDITD EEGIPALHEN VQANGEVESS TVELSSCTSG QQESETTAAP CEESSPSQIK
0901: VSPSLPLGVA KMEVDPLEVI DHEAETSKVS EHEAYMLETG QLVAMDIAEE GIAALNQNVQ ANGDISSSTV ELSSGTSGQQ QSETTAAPCE VNTSQTEVSP
1001: SLPLGVAKME VESLEVIEHE ACMPQAGQVL AAMDIAKENI PAMDTAKENI QPGGYLSPLK ENILAAHQNI QPEEHMTPVK GSILASHTNA QAIGEMTPMT
1101: LLSQKLSSIS LGQANGEATP LTQKAPSISQ GQSNGEATPL NQKLSSISQG QSNGDATPLT QKLSSISQGQ SNGDATPLTL LAQKLSSISL GDATD
0101: TEELGIVNST FRKSQGSRLL PGIAEEMRRS MESTTSSLES ESFVLESLET ELFDNVRASI QRTLGKPDKA PSVASGSSKT PRATAKAPPV TARKGVDRIP
0201: QTQSKIKPPA SISNGSVGGS RQRPQVTLKE PAAARVAVSK AAEAKPSSKP PRALPRVATM RAPTNTAVTS GIADKRSSTG GVVNRQAVAK SANSSASVPS
0301: RPGGGTKNNS TSKSGALSSA ASPSLRSAPM AGGKTKSPTL ISKNRTAQRI PIRSSRSDIS KVDPARASRN KSHSEGASPT ISPSSSVDSM SSVISGVSTA
0401: STVGRASHTS ETYSTRSSSL SPSNRKSNDH PPTTLRRPVI VTEGQASGAF ADNVKSNVDT STQGNGFKPS GLRRPTPKIG YFDAEKSVEQ KAGARAQLQP
0501: TKVLFSPLAT QNSWIPSTPK TIPAALTFEQ EEPKSRAAAP SQTKSRAAAP SLPLKVAQTE VKPSKVTEPE ASQAKVSTPL PLRVAQTEVK QSKVTEPEAS
0601: QAKASTPLPL RVAQTEVKPS KVTEHDASQT KASASLPIRV AQAEVDPLKV SEHEASQTEA LPILSPRVAQ TEVEPAKVAE HDIFGTKGPS MPLIRAAQTE
0701: IETPKVSEHE THMQETGPLV VAMDSAEEGI PALHQNVQAN GEVESSKVSE LEAHVNETGL LLAMGIAEEG FPALHENVQV NGEGESSKVS EHEAHMQETG
0801: LLGAMDIAEE GFPALHENVQ VNGEGESSKV SEHEAHMQET GLLVAMDITD EEGIPALHEN VQANGEVESS TVELSSCTSG QQESETTAAP CEESSPSQIK
0901: VSPSLPLGVA KMEVDPLEVI DHEAETSKVS EHEAYMLETG QLVAMDIAEE GIAALNQNVQ ANGDISSSTV ELSSGTSGQQ QSETTAAPCE VNTSQTEVSP
1001: SLPLGVAKME VESLEVIEHE ACMPQAGQVL AAMDIAKENI PAMDTAKENI QPGGYLSPLK ENILAAHQNI QPEEHMTPVK GSILASHTNA QAIGEMTPMT
1101: LLSQKLSSIS LGQANGEATP LTQKAPSISQ GQSNGEATPL NQKLSSISQG QSNGDATPLT QKLSSISQGQ SNGDATPLTL LAQKLSSISL GDATD
001: MEDKESKKSE VEVDGLGLID VAVEDDSLLF SEFSETDKDD KCLKEDKDLN FMRDTQYCDD EILASSVEEK EEVLQPHESP EPEKVMKKGK YNLRKSLAWD
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
Arabidopsis Description
At3g53320 [Source:UniProtKB/TrEMBL;Acc:Q9LFI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.