Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G058600.1 | Wheat | nucleus | 90.96 | 87.53 |
| TraesCS1B01G076900.1 | Wheat | nucleus | 72.7 | 82.12 |
| HORVU1Hr1G011900.6 | Barley | nucleus | 64.35 | 81.05 |
| Os05t0121800-01 | Rice | nucleus | 29.74 | 55.79 |
| Zm00001d021610_P003 | Maize | cytosol | 28.78 | 45.84 |
| KXG36299 | Sorghum | nucleus | 29.13 | 44.73 |
| Zm00001d006473_P001 | Maize | cytosol | 30.09 | 44.65 |
| GSMUA_Achr5P07300_001 | Banana | cytosol | 4.43 | 36.69 |
| GSMUA_Achr10P... | Banana | cytosol | 10.96 | 28.06 |
| AT3G53320.1 | Thale cress | nucleus | 11.39 | 23.69 |
| CDX73561 | Canola | nucleus | 10.35 | 22.0 |
| CDX78168 | Canola | nucleus | 10.26 | 21.81 |
| Bra006990.1-P | Field mustard | nucleus | 10.26 | 21.81 |
| AT2G37070.1 | Thale cress | nucleus | 8.78 | 19.06 |
| CDY18461 | Canola | endoplasmic reticulum | 7.04 | 18.75 |
| Bra017208.1-P | Field mustard | nucleus | 7.22 | 18.2 |
| KRG95926 | Soybean | nucleus | 11.3 | 17.83 |
| KRH67641 | Soybean | nucleus | 11.39 | 17.33 |
| VIT_13s0019g03630.t01 | Wine grape | nucleus | 11.74 | 17.29 |
| VIT_08s0040g02430.t01 | Wine grape | nucleus | 10.35 | 17.27 |
| PGSC0003DMT400004371 | Potato | nucleus | 16.0 | 14.15 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G059700.2 | EnsemblPlantsGene:TraesCS1D01G059700 | PANTHER:PTHR33737 | PANTHER:PTHR33737:SF6 | SEG:seg | MapMan:20.1.5.1.2 |
Description
No Description!
Coordinates
chr1D:+:39943390..39948546
Molecular Weight (calculated)
119978.0 Da
IEP (calculated)
5.248
GRAVY (calculated)
-0.455
Length
1150 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDALSLIDVS GEEDDFLLDL ASPPQHPDPP PRAAPGVSVV AAVSERNTVG SPPPPAVAAG GQVVDPAEQG PERAQSPKKT KPKGGVNLRK SLAWDKAFFT
0101: SEGVLDTEEL GIVNSTFRKS QGSRLLPGIA EEMRRSMEST TSSLESESFV LESLETELFD NVRASIQRTL GKPDKAPVVP SASSKTPRAT AKAPPVTARK
0201: GVDRIPQTQS KIRPPASTSN GSVGGSKQRP QVTLKEPAAA RVAVSKAAEA KPSSKPPRAL PRVATMRAPT TTAVTSGISD KRSSTGGVVN RQAVAKSANS
0301: SASVPSRPGG GTKNNSTSKS GALSSAASPS LRSAPMAGGK TKSPTLISKN RTAQRIPIRS SSRSDISKVD PARASRNKSH GEGASPTISP SSSVDSMSSV
0401: ISGVSTASTV GRASHTSETY STRSSSLSPS TRKSNDHPPT TLRRPGIVTE GQASGAFADN VKSNVDTSTQ GNGFKPSGLR RPTPKIGYFD AEKSVEQKAG
0501: ARAQLQPTKV LFSPLATQNS WIPSTPKTIP AALTFEQEEP KSRAAAPSQT KAPPSLPLKV AQTEVKPSKV TEPEASQAKV STPLPLRVAQ TGVKQSKVTE
0601: PEASQDKAST PLPLRVAQTE VKPSEVTEHD ASQTKASASL PIRVAQAEVD PLKVAEHEAS QTEVLPILSP RVAQTEVEPA KVAEHDFFGT KGPSMPLIRA
0701: AQTEIETPKV SELEAHVNET GLLLAHMQET GPLVVAMDSA EEGIPALHQN VQANGEVESS KVSELEAHVN ETGLLLAMEI AEEGFPALHE NVQVNGEVES
0801: SKVSEHEAHM QETGLLVAMD ITDEEGIPAL HENVQANGEV ESSTVELSSC TSGQQASETT AAPCEESSPS QIKVSPSLPL GVAKMEVDPL EVTDHEVETS
0901: KVSEHEAYML ETGQLVAMDI AEEGIAALNQ NVQANGDISS STVELSSGTS GQQQSEATAA PCEDNTSSQT EVSSSLPLGV AKVEVEPVEV IEHEACTPQA
1001: GPVLAAMDIA KENIPAMDTA KENVQPGGYS SPLKENILAP HQNIQPEEHM TPVKGSILAS HTNAQAIGEM TPMTLLSQKL SSISLGQANG EATPLAQKLS
1101: SISQGQANGE ATPLTQKAPS ISQGQSNGDA TPLTLLAQKL SSISLGDVTD
0101: SEGVLDTEEL GIVNSTFRKS QGSRLLPGIA EEMRRSMEST TSSLESESFV LESLETELFD NVRASIQRTL GKPDKAPVVP SASSKTPRAT AKAPPVTARK
0201: GVDRIPQTQS KIRPPASTSN GSVGGSKQRP QVTLKEPAAA RVAVSKAAEA KPSSKPPRAL PRVATMRAPT TTAVTSGISD KRSSTGGVVN RQAVAKSANS
0301: SASVPSRPGG GTKNNSTSKS GALSSAASPS LRSAPMAGGK TKSPTLISKN RTAQRIPIRS SSRSDISKVD PARASRNKSH GEGASPTISP SSSVDSMSSV
0401: ISGVSTASTV GRASHTSETY STRSSSLSPS TRKSNDHPPT TLRRPGIVTE GQASGAFADN VKSNVDTSTQ GNGFKPSGLR RPTPKIGYFD AEKSVEQKAG
0501: ARAQLQPTKV LFSPLATQNS WIPSTPKTIP AALTFEQEEP KSRAAAPSQT KAPPSLPLKV AQTEVKPSKV TEPEASQAKV STPLPLRVAQ TGVKQSKVTE
0601: PEASQDKAST PLPLRVAQTE VKPSEVTEHD ASQTKASASL PIRVAQAEVD PLKVAEHEAS QTEVLPILSP RVAQTEVEPA KVAEHDFFGT KGPSMPLIRA
0701: AQTEIETPKV SELEAHVNET GLLLAHMQET GPLVVAMDSA EEGIPALHQN VQANGEVESS KVSELEAHVN ETGLLLAMEI AEEGFPALHE NVQVNGEVES
0801: SKVSEHEAHM QETGLLVAMD ITDEEGIPAL HENVQANGEV ESSTVELSSC TSGQQASETT AAPCEESSPS QIKVSPSLPL GVAKMEVDPL EVTDHEVETS
0901: KVSEHEAYML ETGQLVAMDI AEEGIAALNQ NVQANGDISS STVELSSGTS GQQQSEATAA PCEDNTSSQT EVSSSLPLGV AKVEVEPVEV IEHEACTPQA
1001: GPVLAAMDIA KENIPAMDTA KENVQPGGYS SPLKENILAP HQNIQPEEHM TPVKGSILAS HTNAQAIGEM TPMTLLSQKL SSISLGQANG EATPLAQKLS
1101: SISQGQANGE ATPLTQKAPS ISQGQSNGDA TPLTLLAQKL SSISLGDVTD
001: MEDKESKKSE VEVDGLGLID VAVEDDSLLF SEFSETDKDD KCLKEDKDLN FMRDTQYCDD EILASSVEEK EEVLQPHESP EPEKVMKKGK YNLRKSLAWD
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
Arabidopsis Description
At3g53320 [Source:UniProtKB/TrEMBL;Acc:Q9LFI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.