Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78168 | Canola | nucleus | 87.25 | 87.25 |
| AT3G53320.1 | Thale cress | nucleus | 60.63 | 59.31 |
| CDY18461 | Canola | endoplasmic reticulum | 26.43 | 33.1 |
| GSMUA_Achr5P07300_001 | Banana | cytosol | 7.76 | 30.22 |
| HORVU6Hr1G008700.1 | Barley | cytosol | 4.81 | 27.96 |
| GSMUA_Achr10P... | Banana | cytosol | 19.04 | 22.94 |
| VIT_08s0040g02430.t01 | Wine grape | nucleus | 28.84 | 22.64 |
| Os05t0121800-01 | Rice | nucleus | 22.92 | 20.23 |
| KRH67641 | Soybean | nucleus | 26.99 | 19.31 |
| KRG95926 | Soybean | nucleus | 25.88 | 19.2 |
| HORVU2Hr1G101950.1 | Barley | cytosol | 8.32 | 18.99 |
| Zm00001d006473_P001 | Maize | cytosol | 23.11 | 16.13 |
| Zm00001d021610_P003 | Maize | cytosol | 21.44 | 16.07 |
| KXG36299 | Sorghum | nucleus | 22.0 | 15.89 |
| HORVU1Hr1G011900.6 | Barley | nucleus | 21.81 | 12.92 |
| TraesCS1B01G076900.1 | Wheat | nucleus | 21.81 | 11.59 |
| TraesCS1D01G059700.2 | Wheat | nucleus | 22.0 | 10.35 |
| PGSC0003DMT400004371 | Potato | nucleus | 23.84 | 9.92 |
| TraesCS1A01G058600.1 | Wheat | nucleus | 21.63 | 9.79 |
| HORVU7Hr1G087000.5 | Barley | plastid | 5.91 | 7.98 |
Protein Annotations
| EnsemblPlants:CDX73561 | EnsemblPlantsGene:GSBRNA2T00109109001 | PANTHER:PTHR33737 | PANTHER:PTHR33737:SF3 | ProteinID:CDX73561 | ProteinID:CDX73561.1 |
| SEG:seg | UniParc:UPI0004EF03DF | MapMan:20.1.5.1.2 | : | : | : |
Description
BnaC08g24420D
Coordinates
chrLK031799:+:1256334..1259429
Molecular Weight (calculated)
57619.0 Da
IEP (calculated)
9.659
GRAVY (calculated)
-0.758
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDNENKKSE GEVEGLGLID VAAEDDSLLF SSFPNPTTYE FSEADEDEKC LNDGKDRTFL RETESCDEEI LVSSVEEKED VLQPRDSPEP QKVTKSGKYN
101: LRKSLAWDNA FFTSQGVLEP EEISSMMESN HKSERNGLPT IQEDVNRSTE SISTFQSDCP VENSQEFVLF EDVRASIQRS AKASDAPIPG KDNELGAIEV
201: ATSPTSSTVE VIASQEKMKP KASSKKLSIR ANGSGKATKQ PVSATRGLNT SVSKPTPNRV GKVRLLSTTP TFRASLDVSK TKLEKDSKLP AGKEPSVPRI
301: PISRRPTFPK PSVVKSTLRS SAASKNELTS SCSSLESCAS AASSSASHKS SLNQIKKKND SSSRIANKST SRGIMGQPRI PPPQPTKKTT KSNLSSAGSI
401: SDCSSESSRA SATSQTAKSI QKAVSGANDT VKSLKNSKDA SVVQADAKEG TKRVSAINGG LAPPGSMKQS GLRVPTPKIG FFDGGRQGSS SSAGKKVGKS
501: PAQESSNLKT KAAASRLVPA SSPKLQNKLY SKNDAEDQLE G
101: LRKSLAWDNA FFTSQGVLEP EEISSMMESN HKSERNGLPT IQEDVNRSTE SISTFQSDCP VENSQEFVLF EDVRASIQRS AKASDAPIPG KDNELGAIEV
201: ATSPTSSTVE VIASQEKMKP KASSKKLSIR ANGSGKATKQ PVSATRGLNT SVSKPTPNRV GKVRLLSTTP TFRASLDVSK TKLEKDSKLP AGKEPSVPRI
301: PISRRPTFPK PSVVKSTLRS SAASKNELTS SCSSLESCAS AASSSASHKS SLNQIKKKND SSSRIANKST SRGIMGQPRI PPPQPTKKTT KSNLSSAGSI
401: SDCSSESSRA SATSQTAKSI QKAVSGANDT VKSLKNSKDA SVVQADAKEG TKRVSAINGG LAPPGSMKQS GLRVPTPKIG FFDGGRQGSS SSAGKKVGKS
501: PAQESSNLKT KAAASRLVPA SSPKLQNKLY SKNDAEDQLE G
001: MEDKESKKSE VEVDGLGLID VAVEDDSLLF SEFSETDKDD KCLKEDKDLN FMRDTQYCDD EILASSVEEK EEVLQPHESP EPEKVMKKGK YNLRKSLAWD
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
Arabidopsis Description
At3g53320 [Source:UniProtKB/TrEMBL;Acc:Q9LFI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.