Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P07300_001 | Banana | cytosol | 7.69 | 38.13 |
| AT3G53320.1 | Thale cress | nucleus | 24.96 | 31.1 |
| HORVU6Hr1G008700.1 | Barley | cytosol | 4.06 | 30.11 |
| KRH67641 | Soybean | nucleus | 32.95 | 30.03 |
| KRG95926 | Soybean | nucleus | 31.35 | 29.63 |
| CDX73561 | Canola | nucleus | 22.64 | 28.84 |
| Bra006990.1-P | Field mustard | nucleus | 22.5 | 28.65 |
| CDX78168 | Canola | nucleus | 22.5 | 28.65 |
| GSMUA_Achr10P... | Banana | cytosol | 17.85 | 27.39 |
| AT2G37070.1 | Thale cress | nucleus | 19.45 | 25.28 |
| VIT_13s0019g03630.t01 | Wine grape | nucleus | 27.58 | 24.33 |
| CDY18461 | Canola | endoplasmic reticulum | 14.8 | 23.61 |
| Bra017208.1-P | Field mustard | nucleus | 15.53 | 23.46 |
| Os05t0121800-01 | Rice | nucleus | 17.85 | 20.07 |
| HORVU2Hr1G101950.1 | Barley | cytosol | 6.1 | 17.72 |
| Zm00001d021610_P003 | Maize | cytosol | 16.84 | 16.07 |
| KXG36299 | Sorghum | nucleus | 17.13 | 15.75 |
| Zm00001d006473_P001 | Maize | cytosol | 17.27 | 15.35 |
| PGSC0003DMT400004371 | Potato | nucleus | 25.69 | 13.62 |
| HORVU1Hr1G011900.6 | Barley | nucleus | 16.98 | 12.81 |
| HORVU7Hr1G087000.5 | Barley | plastid | 7.26 | 12.47 |
| TraesCS1B01G076900.1 | Wheat | nucleus | 17.27 | 11.69 |
| TraesCS1D01G059700.2 | Wheat | nucleus | 17.27 | 10.35 |
| TraesCS1A01G058600.1 | Wheat | nucleus | 17.71 | 10.21 |
Protein Annotations
| ArrayExpress:VIT_08s0040g02430 | EMBL:FN596008 | EnsemblPlants:VIT_08s0040g02430.t01 | EnsemblPlantsGene:VIT_08s0040g02430 | EntrezGene:100263620 | EntrezGene:LOC100263620 |
| ncoils:Coil | PANTHER:PTHR33737 | PANTHER:PTHR33737:SF3 | ProteinID:CCB57040 | ProteinID:CCB57040.1 | RefSeq:XP_002274976 |
| RefSeq:XP_002274976.2 | SEG:seg | UniParc:UPI000210885D | UniProt:F6HQZ1 | wikigene:100263620 | wikigene:LOC100263620 |
| MapMan:20.1.5.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:13496413..13502486
Molecular Weight (calculated)
73146.2 Da
IEP (calculated)
10.209
GRAVY (calculated)
-0.739
Length
689 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAQPKYTGE NQQEHRIFEF PDAVDASKAE DSADIVDQRD QVSQLSESLE PERTQKIGKC NLRKSLAWDS AFFTSAGVLE PEELSSMIEG VDRDGKHSLP
101: RIQEDDLRRS ADSISTMESD SLTLESLEAD LFEDVRASIQ KSRIRSNVTH SKNSKAGTGE MEGRTIHCKC STTYVLGKRQ KTKYYSNFQV QPKAASGMQG
201: SGKMIKQGPP VASSRQSISS LPRPPKIISR ANPISTASTK RASLGANSLR MEKDSAKGSI GRGAPGSKIT GLGESHGFVP RPTQSSKSSS KRSLPAAKTE
301: PTTSSSSFDS SGSTPSDNIG KSSTNTMRRK FDSRTSNPPP SGSTLKIPTR TAVRNKTLSA NSHISAYLMS TAKLSSSMSP ASSISEWSTE SSSSTSTVNQ
401: RSSNSTASLG TSSPCKGVCE DRNASHTVGP ENQVTGLLSQ SGKKSTTGTG TLHHPASTKP SGLRMPSPKI GFFDGAKSMV RTPNGSMQSH SGVPSSLPKV
501: GAGFCSPKGA SNKGKQGNFQ TVRTVTPVGN IKPNTQKNSL SMKPSSSLPH QQPSNASTKV SSASKSVRNC AGQSPEIQGN ISPKANGESH LKAEEAGLGG
601: VDRAKHDPDS GLISDKNGSR EDIKITPIKG DGPHSIYNST TVELSTTMRV PFAVNNPFCS RDFPTGLTVE MVEKADTSPF LDSTLKENS
101: RIQEDDLRRS ADSISTMESD SLTLESLEAD LFEDVRASIQ KSRIRSNVTH SKNSKAGTGE MEGRTIHCKC STTYVLGKRQ KTKYYSNFQV QPKAASGMQG
201: SGKMIKQGPP VASSRQSISS LPRPPKIISR ANPISTASTK RASLGANSLR MEKDSAKGSI GRGAPGSKIT GLGESHGFVP RPTQSSKSSS KRSLPAAKTE
301: PTTSSSSFDS SGSTPSDNIG KSSTNTMRRK FDSRTSNPPP SGSTLKIPTR TAVRNKTLSA NSHISAYLMS TAKLSSSMSP ASSISEWSTE SSSSTSTVNQ
401: RSSNSTASLG TSSPCKGVCE DRNASHTVGP ENQVTGLLSQ SGKKSTTGTG TLHHPASTKP SGLRMPSPKI GFFDGAKSMV RTPNGSMQSH SGVPSSLPKV
501: GAGFCSPKGA SNKGKQGNFQ TVRTVTPVGN IKPNTQKNSL SMKPSSSLPH QQPSNASTKV SSASKSVRNC AGQSPEIQGN ISPKANGESH LKAEEAGLGG
601: VDRAKHDPDS GLISDKNGSR EDIKITPIKG DGPHSIYNST TVELSTTMRV PFAVNNPFCS RDFPTGLTVE MVEKADTSPF LDSTLKENS
001: MEDKESKKSE VEVDGLGLID VAVEDDSLLF SEFSETDKDD KCLKEDKDLN FMRDTQYCDD EILASSVEEK EEVLQPHESP EPEKVMKKGK YNLRKSLAWD
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
Arabidopsis Description
At3g53320 [Source:UniProtKB/TrEMBL;Acc:Q9LFI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.