Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G011900.6 | Barley | nucleus | 68.76 | 76.67 |
| TraesCS1D01G059700.2 | Wheat | nucleus | 82.12 | 72.7 |
| TraesCS1A01G058600.1 | Wheat | nucleus | 82.81 | 70.54 |
| Os05t0121800-01 | Rice | nucleus | 33.79 | 56.12 |
| Zm00001d021610_P003 | Maize | cytosol | 31.53 | 44.46 |
| KXG36299 | Sorghum | nucleus | 31.83 | 43.26 |
| Zm00001d006473_P001 | Maize | cytosol | 32.32 | 42.45 |
| GSMUA_Achr5P07300_001 | Banana | cytosol | 4.91 | 35.97 |
| GSMUA_Achr10P... | Banana | cytosol | 12.38 | 28.06 |
| AT3G53320.1 | Thale cress | nucleus | 12.18 | 22.42 |
| CDX73561 | Canola | nucleus | 11.59 | 21.81 |
| CDX78168 | Canola | nucleus | 11.3 | 21.26 |
| Bra006990.1-P | Field mustard | nucleus | 11.3 | 21.26 |
| CDY18461 | Canola | endoplasmic reticulum | 7.96 | 18.75 |
| Bra017208.1-P | Field mustard | nucleus | 8.35 | 18.64 |
| AT2G37070.1 | Thale cress | nucleus | 9.53 | 18.3 |
| KRG95926 | Soybean | nucleus | 12.87 | 17.97 |
| VIT_13s0019g03630.t01 | Wine grape | nucleus | 13.56 | 17.67 |
| KRH67641 | Soybean | nucleus | 12.97 | 17.46 |
| VIT_08s0040g02430.t01 | Wine grape | nucleus | 11.69 | 17.27 |
| PGSC0003DMT400004371 | Potato | nucleus | 16.5 | 12.92 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G076900.1 | EnsemblPlantsGene:TraesCS1B01G076900 | PANTHER:PTHR33737 | PANTHER:PTHR33737:SF6 | SEG:seg | MapMan:20.1.5.1.2 |
Description
No Description!
Coordinates
chr1B:+:59596531..59602163
Molecular Weight (calculated)
105878.0 Da
IEP (calculated)
5.461
GRAVY (calculated)
-0.463
Length
1018 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDALSLIDVS GEEDDFLLDL ASPPQHPDPP ARAAPGAAVV GADSKRPAVG SPPPPPAVAG GQAVDPAEQA PERAQSPKKT KGVNLRKSLA WDKAFFTSEG
0101: VLDTEELGIV NSTFRKSQGP RLLPGIAEEM RRSMESTTSS LESESFVLES LETELFDNVR ASIQRTLGKP DKAPIVASGS SKTPRSAAKA PPVTVRKGVD
0201: RIPQTQSKIR PPASISNGSV GGTKQRPQVT LKEPAAARVA ASKAAEAKPS SKPPRALPRV ATMRAPTNTA VTSGIADKRS STGGVVNRQA VAKSANSSAS
0301: VPSRPGGGPK NNSTSKSGAL SLAASPSLRS APMAGGKTKS PTLISKNRTA QRIPIRSSSR SDISKVDPAR ASRNKSHGES ASPTISPSSS VDSMSSVISG
0401: VSTASTVGRA SHTSETFSTR SSSLSPSTRK SNDHPPTTLR RPVIVREGQA SGAFADNVKS NVDTSTQGNG FKPSGLRRPT PKIGYFDAEK SVEQKAGARA
0501: QLQPTKVLFS PLATQNSWIP STPKTIPATL TFEQEEPKSR AAAPSQTKAS PSLPLRVAQT EVKPSKVTEH EVSQKEALPL LSPRVAQTET EPSEVAEDDI
0601: SPTKASPSLP SLTVVQTEVE SSKVSENEAA MHESGPLVTF TASFSETTVA PCEDSSPSLL LGVAKMEVEP LGVIDHEAET SKVSEHEAHV LETGPLVAMD
0701: IAEDEGIPAL NQNVQANGDI SSSTVELSSC TSGQQESETT AAPCEDSSPS QNKVSPSLPS LTVVQTEVES SKVAEHEAHV LETGPLVAMD IAEDEGIPAL
0801: NQNVQANGDI SSSTVELSSG ASGQPQSETT AAPCEESVSS QTKLSSPSLP LEVAKMEVEP LEVIEHEACM PQAAMDIAKE NIPAMDTAKE NIQPGGYSSP
0901: LKENILASHQ NIQPEEHMTP VKGSILASHT NAQAIGEMTP ITLLSQKLSS ISLGQANGEA TPLTQKASSI SQGQSNGDVT PLTQKAPSIS QGQSNGEATP
1001: LTLLAQKLSS ISLGDATD
0101: VLDTEELGIV NSTFRKSQGP RLLPGIAEEM RRSMESTTSS LESESFVLES LETELFDNVR ASIQRTLGKP DKAPIVASGS SKTPRSAAKA PPVTVRKGVD
0201: RIPQTQSKIR PPASISNGSV GGTKQRPQVT LKEPAAARVA ASKAAEAKPS SKPPRALPRV ATMRAPTNTA VTSGIADKRS STGGVVNRQA VAKSANSSAS
0301: VPSRPGGGPK NNSTSKSGAL SLAASPSLRS APMAGGKTKS PTLISKNRTA QRIPIRSSSR SDISKVDPAR ASRNKSHGES ASPTISPSSS VDSMSSVISG
0401: VSTASTVGRA SHTSETFSTR SSSLSPSTRK SNDHPPTTLR RPVIVREGQA SGAFADNVKS NVDTSTQGNG FKPSGLRRPT PKIGYFDAEK SVEQKAGARA
0501: QLQPTKVLFS PLATQNSWIP STPKTIPATL TFEQEEPKSR AAAPSQTKAS PSLPLRVAQT EVKPSKVTEH EVSQKEALPL LSPRVAQTET EPSEVAEDDI
0601: SPTKASPSLP SLTVVQTEVE SSKVSENEAA MHESGPLVTF TASFSETTVA PCEDSSPSLL LGVAKMEVEP LGVIDHEAET SKVSEHEAHV LETGPLVAMD
0701: IAEDEGIPAL NQNVQANGDI SSSTVELSSC TSGQQESETT AAPCEDSSPS QNKVSPSLPS LTVVQTEVES SKVAEHEAHV LETGPLVAMD IAEDEGIPAL
0801: NQNVQANGDI SSSTVELSSG ASGQPQSETT AAPCEESVSS QTKLSSPSLP LEVAKMEVEP LEVIEHEACM PQAAMDIAKE NIPAMDTAKE NIQPGGYSSP
0901: LKENILASHQ NIQPEEHMTP VKGSILASHT NAQAIGEMTP ITLLSQKLSS ISLGQANGEA TPLTQKASSI SQGQSNGDVT PLTQKAPSIS QGQSNGEATP
1001: LTLLAQKLSS ISLGDATD
001: MGEEKENWRS ELDDINGLSL IDFSAEDDNL LLSSFLDPTT FDFSDTDKED RGLCLFGDTH NCCDEETLGS TTLEEKEPHK IMKTNLRKSL AWDKAFFTNA
101: GVLEPDELSS MMGRKSLPAV QEDLHRSTES MSTLKSDCTV ETGQEFFMCD AATPDKRKDL GSTEAVPSPT TSTLDDPSSE EKMKPNPIRK RPGIRSQGLA
201: KATKHPVASE EHNTSISRPS TGLNRPSSGL SKTKRASVDT NKAKQETNPK SSGGKEPLAS RVPISRRPRP IVSTPVVPFK SALRSSVASK NELTSSCSSI
301: ESCLSVSSTA SNKPSIHSVK QKKDQSLRIA SHSLANRPKS SAGSRNIDQL KVPPVSAGRT YKFNVSRLSS SVDWSSESPR AFTPNKMAKG NKKSVHGDNG
401: PPTDYTTQTL KPLNNSKDVS VVQDDPKPSA SMMKPTGLRV PSPKVGYFDG ARGSVARTPT GSCTGPVSGL SKHGACSPDE FTPSRTAKSQ PTMSKAAVRP
501: VSRSSRLIVS ASPKLTNKRY SKVSAEEQLG
101: GVLEPDELSS MMGRKSLPAV QEDLHRSTES MSTLKSDCTV ETGQEFFMCD AATPDKRKDL GSTEAVPSPT TSTLDDPSSE EKMKPNPIRK RPGIRSQGLA
201: KATKHPVASE EHNTSISRPS TGLNRPSSGL SKTKRASVDT NKAKQETNPK SSGGKEPLAS RVPISRRPRP IVSTPVVPFK SALRSSVASK NELTSSCSSI
301: ESCLSVSSTA SNKPSIHSVK QKKDQSLRIA SHSLANRPKS SAGSRNIDQL KVPPVSAGRT YKFNVSRLSS SVDWSSESPR AFTPNKMAKG NKKSVHGDNG
401: PPTDYTTQTL KPLNNSKDVS VVQDDPKPSA SMMKPTGLRV PSPKVGYFDG ARGSVARTPT GSCTGPVSGL SKHGACSPDE FTPSRTAKSQ PTMSKAAVRP
501: VSRSSRLIVS ASPKLTNKRY SKVSAEEQLG
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53320.1); Has 1323 Blast hits to 775 proteins in 176 species: Archae - 0; Bacteria - 113; Metazoa - 351; Fungi - 175; Plants - 115; Viruses - 13; Other Eukaryotes /.../ (source: NCBI BLink). [Source:TAIR;Acc:AT2G37070]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.