Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P07300_001 | Banana | cytosol | 6.4 | 35.97 |
| HORVU6Hr1G008700.1 | Barley | cytosol | 3.46 | 29.03 |
| VIT_08s0040g02430.t01 | Wine grape | nucleus | 24.33 | 27.58 |
| GSMUA_Achr10P... | Banana | cytosol | 15.24 | 26.5 |
| Os05t0121800-01 | Rice | nucleus | 16.13 | 20.55 |
| HORVU2Hr1G101950.1 | Barley | cytosol | 6.15 | 20.25 |
| KXG36299 | Sorghum | nucleus | 17.67 | 18.42 |
| Zm00001d021610_P003 | Maize | cytosol | 16.65 | 18.01 |
| Zm00001d006473_P001 | Maize | cytosol | 17.41 | 17.55 |
| HORVU1Hr1G011900.6 | Barley | nucleus | 17.8 | 15.22 |
| TraesCS1B01G076900.1 | Wheat | nucleus | 17.67 | 13.56 |
| HORVU7Hr1G087000.5 | Barley | plastid | 6.53 | 12.72 |
| TraesCS1D01G059700.2 | Wheat | nucleus | 17.29 | 11.74 |
| TraesCS1A01G058600.1 | Wheat | nucleus | 17.93 | 11.72 |
Protein Annotations
| EntrezGene:100249659 | wikigene:100249659 | EntrezGene:100852912 | wikigene:100852912 | MapMan:20.1.5.1.2 | ProteinID:CCB56222 |
| ProteinID:CCB56222.1 | UniProt:F6HNK3 | EMBL:FN595998 | EntrezGene:LOC100249659 | wikigene:LOC100249659 | EntrezGene:LOC100852912 |
| wikigene:LOC100852912 | PANTHER:PTHR33737 | PANTHER:PTHR33737:SF2 | TIGR:TC51929 | UniParc:UPI000210A457 | ArrayExpress:VIT_13s0019g03630 |
| EnsemblPlantsGene:VIT_13s0019g03630 | EnsemblPlants:VIT_13s0019g03630.t01 | unigene:Vvi.15083 | RefSeq:XP_002275445 | RefSeq:XP_002275445.2 | RefSeq:XP_003633463 |
| RefSeq:XP_003633463.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:+:4787337..4792649
Molecular Weight (calculated)
85558.5 Da
IEP (calculated)
9.636
GRAVY (calculated)
-0.815
Length
781 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGVDDQKKN LEEGKIRFSV TLENRYDSLE LSDKRNPQEL ENAGDIPGQS KLEPSLSDSL EPERPRGTGN YNLRKSLAWD SAFFTSKGVL DPENDDFELF
101: DTGNSLELEN AADIFGQREH EYLPSDSLEP EIPSRDGKFN LRQSLAWDSA FFTSEGVLDP EELFMINKGF KKAKTRLLPG IKEELQRSAE SNSTIDSDRF
201: SLESLEIDLF EDIRASIQKS TSEKLDAACQ TRMKTMPAIT RQTINVHGSQ RTAKEISIHT RVQATGSRES IPLPLKPPKM LGQSNSISAA PTKRVPLGAN
301: RVEVENRNAK TTLGKRLVVT RQPCLVNSCS IIPSSTPSPR SSSGSATATN KSTVSCSPYD RSDSASSDAT GKSPSNSLRR KIDSRSINLA TSVSTLKTPL
401: RCSTKTKNDV RNSGHSSSWF SSSLSAQKPS SCTSSTSSFD GWSSESSSST VNQRSNGSKA SLDGAPYQGF SFDNDIIQAS DIESHPPNQS SVGSKSHRTR
501: LPNQYIKKCS MVNGPVSPNV SGNSKPSSLR MPSPKIGFFD VEKSMPTGLN GSFQFRSGAQ STLAKSGTRI SNLSGAANRA RRGKLQPART SIGTQNVKRG
601: SHQTEVSCPD SGMNPAYPVQ FHNVEDASKK GSGLLRTTRS HLGMTVKNQN VSSTKVSREN CSKTPEVGSS SKAENKGAQA VLKDRMRRES KGTVHVKANK
701: TLTKEGRPHH SRENMNLQRK EHEEVSQNSP QDNQSLLHMN EKENYFEDQV DGLSRQVSVI DLSRDVVVEP RGNVLFQPYC Q
101: DTGNSLELEN AADIFGQREH EYLPSDSLEP EIPSRDGKFN LRQSLAWDSA FFTSEGVLDP EELFMINKGF KKAKTRLLPG IKEELQRSAE SNSTIDSDRF
201: SLESLEIDLF EDIRASIQKS TSEKLDAACQ TRMKTMPAIT RQTINVHGSQ RTAKEISIHT RVQATGSRES IPLPLKPPKM LGQSNSISAA PTKRVPLGAN
301: RVEVENRNAK TTLGKRLVVT RQPCLVNSCS IIPSSTPSPR SSSGSATATN KSTVSCSPYD RSDSASSDAT GKSPSNSLRR KIDSRSINLA TSVSTLKTPL
401: RCSTKTKNDV RNSGHSSSWF SSSLSAQKPS SCTSSTSSFD GWSSESSSST VNQRSNGSKA SLDGAPYQGF SFDNDIIQAS DIESHPPNQS SVGSKSHRTR
501: LPNQYIKKCS MVNGPVSPNV SGNSKPSSLR MPSPKIGFFD VEKSMPTGLN GSFQFRSGAQ STLAKSGTRI SNLSGAANRA RRGKLQPART SIGTQNVKRG
601: SHQTEVSCPD SGMNPAYPVQ FHNVEDASKK GSGLLRTTRS HLGMTVKNQN VSSTKVSREN CSKTPEVGSS SKAENKGAQA VLKDRMRRES KGTVHVKANK
701: TLTKEGRPHH SRENMNLQRK EHEEVSQNSP QDNQSLLHMN EKENYFEDQV DGLSRQVSVI DLSRDVVVEP RGNVLFQPYC Q
001: MEDKESKKSE VEVDGLGLID VAVEDDSLLF SEFSETDKDD KCLKEDKDLN FMRDTQYCDD EILASSVEEK EEVLQPHESP EPEKVMKKGK YNLRKSLAWD
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
101: NEFFTSAGVL EPEELSSMME SNHKSGKKAL PTILEDINRS TESISTFQSD CTVENSQEFV LFEDVRASIQ RSAKTSDVAT PGKSNVLRAT DVAISPTSST
201: VDVTATQGKT KSKGSPRNPS RVQGPGKATK QPVATRGLST SISKPPNGLS KVRPLSTTST NRSSLDISKT QQEKNSKLPA GKEPLGPRIS MSRRAKPVLP
301: KPGVPFKSSS RSSDASKNEM TSSCSSLESC ASASSSASHK PSIDSIKKKN DSSSRLSSQP LANRSTSRGI MGQPRIPPQQ TNKTSKPKLS SSVPTAGSIS
401: DYSSESSRAS ETSKMANGNQ KTVSREKVPA NDNTVQTVKP LKNSKDTSVV QADAKEGTKR VSAINGGLVP SASAKPSGLR VPSPKIGFFD GARHGSSSSA
501: SKKSGGKTQP ARSPIQESTN SKSKASSKVV SVSSPKLPNK LYSKIDAEDQ LEG
Arabidopsis Description
At3g53320 [Source:UniProtKB/TrEMBL;Acc:Q9LFI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.