Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G259500.1 | Wheat | plastid | 93.53 | 91.38 |
| HORVU1Hr1G064750.1 | Barley | plastid | 87.65 | 87.65 |
| TraesCS1A01G259700.2 | Wheat | plastid | 93.53 | 80.3 |
| Zm00001d038047_P001 | Maize | plastid | 65.88 | 69.57 |
| EES05886 | Sorghum | plastid | 60.59 | 66.03 |
| Os05t0337400-01 | Rice | extracellular, nucleus, plasma membrane, plastid | 62.94 | 65.24 |
| GSMUA_Achr8P09820_001 | Banana | plastid | 42.35 | 37.5 |
| CDX91016 | Canola | plastid | 37.06 | 36.42 |
| AT5G14910.1 | Thale cress | plastid | 37.65 | 35.96 |
| CDX85578 | Canola | plastid | 37.06 | 35.59 |
| Bra023492.1-P | Field mustard | plastid | 37.06 | 35.2 |
| VIT_14s0066g01780.t01 | Wine grape | plastid | 36.47 | 33.88 |
| Bra006272.1-P | Field mustard | plastid | 34.71 | 32.42 |
| PGSC0003DMT400001367 | Potato | plastid | 34.12 | 31.18 |
| KRG93395 | Soybean | nucleus, plastid | 33.53 | 30.98 |
| Solyc02g087150.2.1 | Tomato | plastid | 33.53 | 30.65 |
| KRH18591 | Soybean | plastid | 32.94 | 30.27 |
| CDX78599 | Canola | plastid | 35.29 | 13.02 |
| CDX70580 | Canola | plastid | 35.88 | 12.6 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G270000.1 | EnsemblPlantsGene:TraesCS1B01G270000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:IPR006121 | PANTHER:PTHR35756 | SEG:seg |
| TIGR:cd00371 | MapMan:17.7.2.3.3 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:474658608..474666009
Molecular Weight (calculated)
17652.9 Da
IEP (calculated)
4.486
GRAVY (calculated)
0.055
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMSSPASTH LLRSAPAAPL LPRRASLQLS CVASGAAPRS RRRSGRLEVV RAATAEVAEA AGAPAYTTES LILYFKAEGT MEERSIPKIT QALEGMDGVS
101: DLEVLIEEGI GSVVLTKATT VQATGVASNL VEAIQGVGFK LQTLSLSFED FDKEDAAAVS GEGADVQASE
101: DLEVLIEEGI GSVVLTKATT VQATGVASNL VEAIQGVGFK LQTLSLSFED FDKEDAAAVS GEGADVQASE
001: MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR KLSSIGEGGE GVAVAEEQPQ ETVSVPVSPS DMLTMFFQAD
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV
Arabidopsis Description
AT5g14910/F2G14_30 [Source:UniProtKB/TrEMBL;Acc:Q93VK7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.