CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04638
KRH28499
KRH57891

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14910.1	KRH04638	AT3G50560.1	21798944
AT5G14910.1	KRH28499	AT3G50560.1	21798944
AT5G14910.1	KRH57891	AT3G50560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18591	Soybean	plastid	80.98	80.54
VIT_14s0066g01780.t01	Wine grape	plastid	52.17	52.46
CDX85578	Canola	plastid	44.57	46.33
Solyc02g087150.2.1	Tomato	plastid	46.74	46.24
PGSC0003DMT400001367	Potato	plastid	46.74	46.24
Bra023492.1-P	Field mustard	plastid	44.57	45.81
CDX91016	Canola	plastid	42.93	45.66
Bra006272.1-P	Field mustard	plastid	45.11	45.6
AT5G14910.1	Thale cress	plastid	42.39	43.82
GSMUA_Achr8P09820_001	Banana	plastid	45.11	43.23
EES05886	Sorghum	plastid	31.52	37.18
Os05t0337400-01	Rice	extracellular, nucleus, plasma membrane, plastid	32.61	36.59
Zm00001d038047_P001	Maize	plastid	30.98	35.4
HORVU1Hr1G064750.1	Barley	plastid	32.61	35.29
TraesCS1D01G259500.1	Wheat	plastid	33.15	35.06
TraesCS1B01G270000.1	Wheat	plastid	30.98	33.53
TraesCS1A01G259700.2	Wheat	plastid	30.98	28.79
CDX78599	Canola	plastid	44.57	17.79
CDX70580	Canola	plastid	45.65	17.36

Protein Annotations

EMBL:ACUP02011551	EnsemblPlants:KRG93395	EnsemblPlantsGene:GLYMA_19G012900	ncoils:Coil	PANTHER:PTHR35756	ProteinID:KRG93395
ProteinID:KRG93395.1	SEG:seg	UniParc:UPI00023D8950	UniProt:A0A0R0ESZ7	MapMan:17.7.2.3.3	:

Description

hypothetical protein

Coordinates

chr19:+:1228610..1232288

Molecular Weight (calculated)

19584.1 Da

IEP (calculated)

4.313

GRAVY (calculated)

0.004

Length

184 amino acids

Sequence
(BLAST)

001: MATLFSPLSL HSARPSSSSF SSSSSSSSSS PFFAFCSFPL RSRISSLKAQ TILLQKMKRV VKAVEEETQQ ELTAVDESEQ PSTSEAPPVV VPVSPSDTLT
101: MFFQAEGTVS ETAIPALTKA LEETDGVTDL KFQLAEGLAI LELKKQTTVQ ATGVASGLLE TIQGSGFKLQ TLNLSFEDEE VAVA

Best Arabidopsis Sequence Match ( AT5G14910.2 )
(BLAST)

001: MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR KLSSIGEGGE GVAVAEEQPQ ETVSVPVSPS DMLTMFFQAD
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV

Arabidopsis Description

AT5g14910/F2G14_30 [Source:UniProtKB/TrEMBL;Acc:Q93VK7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.