CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04638	Soybean	mitochondrion	87.64	85.09
Solyc02g090540.2.1	Tomato	plastid	72.66	78.86
PGSC0003DMT400002020	Potato	extracellular	76.4	77.57
Solyc02g065060.2.1	Tomato	mitochondrion	76.4	76.69
KRH28499	Soybean	plastid	74.53	75.09
PGSC0003DMT400025952	Potato	mitochondrion	73.03	74.43
CDY65018	Canola	plastid	56.18	71.09
AT3G50560.1	Thale cress	plastid	68.54	67.28
Bra030018.1-P	Field mustard	plastid	68.54	66.79
CDY65649	Canola	plastid	68.54	66.79
CDY67513	Canola	plastid	68.54	66.79
Bra036090.1-P	Field mustard	plastid	67.04	65.33
CDY52823	Canola	plastid	66.67	64.96
GSMUA_Achr3P20350_001	Banana	plastid	59.18	64.75
Os08t0476300-02	Rice	mitochondrion	59.55	61.87
EES14019	Sorghum	mitochondrion	59.93	61.54
Zm00001d031808_P001	Maize	mitochondrion, plastid	58.8	61.09
GSMUA_Achr10P...	Banana	cytosol, plastid	53.93	60.0
VIT_00s0379g00050.t01	Wine grape	cytosol	27.34	19.36

Protein Annotations

EMBL:ACUP02003074	EnsemblPlants:KRH57891	EnsemblPlantsGene:GLYMA_05G090600	EntrezGene:100804900	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:SDR_fam	PANTHER:PTHR43431	PFAM:PF00106	PRINTS:PR00081	ProteinID:KRH57891	ProteinID:KRH57891.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002339F64	UniProt:K7KNT2	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr5:+:20572058..20575742

Molecular Weight (calculated)

28841.4 Da

IEP (calculated)

7.468

GRAVY (calculated)

-0.004

Length

267 amino acids

Sequence
(BLAST)

001: MRSMASSASS RGIAAIVGVG PNLGLSIARK FAHEGYTVAI LARDLGRLSR FADEIAREEK AQVFAIRIDC SDSRSVREAF EGVLSLGFVE ILVYNAYQPL
101: PWYPTSFQDL RVDSFEKSLA ISSVGAFHCA QQVLSGMVER GKGTILFTGC SASLNGIVGY SELCCGKFAL RALSQCLAKE FQPQGVHVAH VIIDGVIGPP
201: RGPMLTTTSS SSQRRNSLGE QSSGVVGGGE GTMDPDSLAQ TFWHLHVQDR NAWTQEMDLR SPSARFF

Best Arabidopsis Sequence Match ( AT3G50560.1 )
(BLAST)

001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSIA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF

Arabidopsis Description

AT3g50560/T20E23_160 [Source:UniProtKB/TrEMBL;Acc:Q943Z4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.