Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 5
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52823 | Canola | plastid | 99.64 | 99.64 |
| CDY65018 | Canola | plastid | 75.55 | 98.1 |
| Bra030018.1-P | Field mustard | plastid | 93.8 | 93.8 |
| AT3G50560.1 | Thale cress | plastid | 91.24 | 91.91 |
| Solyc02g090540.2.1 | Tomato | plastid | 63.14 | 70.33 |
| PGSC0003DMT400025952 | Potato | mitochondrion | 65.69 | 68.7 |
| KRH57891 | Soybean | mitochondrion | 65.33 | 67.04 |
| KRH28499 | Soybean | plastid | 64.6 | 66.79 |
| PGSC0003DMT400002020 | Potato | extracellular | 63.5 | 66.16 |
| Solyc02g065060.2.1 | Tomato | mitochondrion | 63.14 | 65.04 |
| KRH04638 | Soybean | mitochondrion | 64.23 | 64.0 |
| GSMUA_Achr3P20350_001 | Banana | plastid | 55.11 | 61.89 |
| Os08t0476300-02 | Rice | mitochondrion | 55.84 | 59.53 |
| EES14019 | Sorghum | mitochondrion | 55.47 | 58.46 |
| Zm00001d031808_P001 | Maize | mitochondrion, plastid | 54.01 | 57.59 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 48.54 | 55.42 |
| VIT_00s0379g00050.t01 | Wine grape | cytosol | 24.45 | 17.77 |
Protein Annotations
| EnsemblPlants:Bra036090.1 | EnsemblPlants:Bra036090.1-P | EnsemblPlantsGene:Bra036090 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR43431 | PFAM:PF00106 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI0002542BE3 |
| UniProt:M4F4T6 | MapMan:35.2 | : | : | : | : |
Description
AT3G50560 (E=2e-110) | short-chain dehydrogenase/reductase (SDR) family protein
Coordinates
chrA09:-:25220440..25223356
Molecular Weight (calculated)
29465.0 Da
IEP (calculated)
6.934
GRAVY (calculated)
-0.036
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRNVGSSSS SGKGIAAVVG VGPQLGRSVA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSSSYPSHHP TSFTHIPFQS FQTSISVSVF AAFLCAQQVI PGMMDKGKGT ILFSGCSASL NGVAGFSELC CGKFALRALS QCLAREYQAF GIHVAHVIID
201: GVVGPPRERN IAPRGTVAEQ SFNTGGQDGE GEGESSGVMG MDPDVLAQTY WSLHVQDQRA WTQELDIRPS NTRF
101: SSSSYPSHHP TSFTHIPFQS FQTSISVSVF AAFLCAQQVI PGMMDKGKGT ILFSGCSASL NGVAGFSELC CGKFALRALS QCLAREYQAF GIHVAHVIID
201: GVVGPPRERN IAPRGTVAEQ SFNTGGQDGE GEGESSGVMG MDPDVLAQTY WSLHVQDQRA WTQELDIRPS NTRF
001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSIA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF
Arabidopsis Description
AT3g50560/T20E23_160 [Source:UniProtKB/TrEMBL;Acc:Q943Z4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.