Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g090540.2.1 | Tomato | plastid | 19.1 | 29.27 |
| Solyc02g065060.2.1 | Tomato | mitochondrion | 20.16 | 28.57 |
| CDY65018 | Canola | plastid | 15.92 | 28.44 |
| GSMUA_Achr3P20350_001 | Banana | plastid | 18.3 | 28.28 |
| PGSC0003DMT400025952 | Potato | mitochondrion | 19.63 | 28.24 |
| PGSC0003DMT400002020 | Potato | extracellular | 19.36 | 27.76 |
| KRH57891 | Soybean | mitochondrion | 19.36 | 27.34 |
| KRH04638 | Soybean | mitochondrion | 19.89 | 27.27 |
| KRH28499 | Soybean | plastid | 17.77 | 25.28 |
| Bra030018.1-P | Field mustard | plastid | 18.3 | 25.18 |
| CDY67513 | Canola | plastid | 18.3 | 25.18 |
| CDY65649 | Canola | plastid | 18.3 | 25.18 |
| AT3G50560.1 | Thale cress | plastid | 17.77 | 24.63 |
| CDY52823 | Canola | plastid | 17.77 | 24.45 |
| Bra036090.1-P | Field mustard | plastid | 17.77 | 24.45 |
| Os08t0476300-02 | Rice | mitochondrion | 15.92 | 23.35 |
| EES14019 | Sorghum | mitochondrion | 15.38 | 22.31 |
| Zm00001d031808_P001 | Maize | mitochondrion, plastid | 15.12 | 22.18 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 10.34 | 16.25 |
Protein Annotations
| ArrayExpress:VIT_00s0379g00050 | EMBL:FN595774 | EnsemblPlants:VIT_00s0379g00050.t01 | EnsemblPlantsGene:VIT_00s0379g00050 | PANTHER:PTHR43431 | ProteinID:CCB52375 |
| ProteinID:CCB52375.1 | SEG:seg | UniParc:UPI0002108AE3 | UniProt:F6HJH6 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrUn:+:26580070..26584498
Molecular Weight (calculated)
42084.9 Da
IEP (calculated)
11.966
GRAVY (calculated)
-0.195
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MLYNGRKVSN SFETIRFLEF NRSMMLLAYD FLRAGNLILK EEILLSHFRS SSSSIFRMRS MASSASSRGI VAIVGVGPKL GRCIARKFAH EGYTVAILAR
101: DLGTPPLSLL PSEVIEVRGR DSERGKGPSV RHQNRLLRLQ KRKRGIRRCA ISRIRGSTSL QCVPAGALAS HQLHRHPHRF LPEITRRFLH RRLPLRSTGD
201: SGNGGQKEGH DSLHRMFGFA EWHCRLLRIM LRKIRLESSI TIFGEGVSAT GRTRGPCYHR WCGRPTQGGN IRVAKIVSWG APERRRGRVY GPRCGGSNLL
301: ALAHSGPGRL DPGDRPSSLP PQALLVLLPL YSFHLLCLSL HYFILPPRAP PPPLPLFPIF SPKVQAALSL KLISNVC
101: DLGTPPLSLL PSEVIEVRGR DSERGKGPSV RHQNRLLRLQ KRKRGIRRCA ISRIRGSTSL QCVPAGALAS HQLHRHPHRF LPEITRRFLH RRLPLRSTGD
201: SGNGGQKEGH DSLHRMFGFA EWHCRLLRIM LRKIRLESSI TIFGEGVSAT GRTRGPCYHR WCGRPTQGGN IRVAKIVSWG APERRRGRVY GPRCGGSNLL
301: ALAHSGPGRL DPGDRPSSLP PQALLVLLPL YSFHLLCLSL HYFILPPRAP PPPLPLFPIF SPKVQAALSL KLISNVC
001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSIA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF
Arabidopsis Description
AT3g50560/T20E23_160 [Source:UniProtKB/TrEMBL;Acc:Q943Z4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.