Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P20350_001 | Banana | plastid | 62.92 | 61.89 |
| Solyc02g090540.2.1 | Tomato | plastid | 60.83 | 59.35 |
| PGSC0003DMT400002020 | Potato | extracellular | 62.5 | 57.03 |
| PGSC0003DMT400025952 | Potato | mitochondrion | 61.67 | 56.49 |
| EES14019 | Sorghum | mitochondrion | 60.42 | 55.77 |
| Zm00001d031808_P001 | Maize | mitochondrion, plastid | 59.58 | 55.64 |
| Os08t0476300-02 | Rice | mitochondrion | 59.58 | 55.64 |
| Solyc02g065060.2.1 | Tomato | mitochondrion | 61.67 | 55.64 |
| KRH57891 | Soybean | mitochondrion | 60.0 | 53.93 |
| KRH04638 | Soybean | mitochondrion | 61.25 | 53.45 |
| KRH28499 | Soybean | plastid | 58.75 | 53.21 |
| CDY65018 | Canola | plastid | 46.67 | 53.08 |
| CDY67513 | Canola | plastid | 56.25 | 49.27 |
| CDY65649 | Canola | plastid | 56.25 | 49.27 |
| Bra030018.1-P | Field mustard | plastid | 56.25 | 49.27 |
| AT3G50560.1 | Thale cress | plastid | 55.42 | 48.9 |
| Bra036090.1-P | Field mustard | plastid | 55.42 | 48.54 |
| CDY52823 | Canola | plastid | 55.0 | 48.18 |
| VIT_00s0379g00050.t01 | Wine grape | cytosol | 16.25 | 10.34 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P30200_001 | EnsemblPlants:GSMUA_Achr10T30200_001 | EnsemblPlantsGene:GSMUA_Achr10G30200_001 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR43431 | PFAM:PF00106 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI000296C401 | UniProt:M0RMP4 |
| MapMan:35.2 | : | : | : | : | : |
Description
oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G30200_001]
Coordinates
chr10:+:32433952..32435042
Molecular Weight (calculated)
26393.5 Da
IEP (calculated)
8.970
GRAVY (calculated)
-0.216
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPCQHAVHV VLHLPQRHRR HRRRRPQAGP LRRQEVRPRR LHPKLSRFAD EIACEAKAQV FAIRIDCSDS KSVREAFEGV LSLGFVEVLV YNACEPPVTC
101: PPTNFTAITV ESFERSLAVS AVGAFHCAQQ VIPGMVERGR GTIIFTGSSV SLSGFAGYCG LSCGKFALRG LSQSLAKEYQ SSGIHIAHVV IHGDIGAPRS
201: SRGDHSTTSM DPDALAQTYW HIHVQDKGAW TQEIDLRSST
101: PPTNFTAITV ESFERSLAVS AVGAFHCAQQ VIPGMVERGR GTIIFTGSSV SLSGFAGYCG LSCGKFALRG LSQSLAKEYQ SSGIHIAHVV IHGDIGAPRS
201: SRGDHSTTSM DPDALAQTYW HIHVQDKGAW TQEIDLRSST
001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSIA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF
Arabidopsis Description
AT3g50560/T20E23_160 [Source:UniProtKB/TrEMBL;Acc:Q943Z4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.