CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031808_P001	Maize	mitochondrion, plastid	91.54	92.61
Os08t0476300-02	Rice	mitochondrion	87.31	88.33
GSMUA_Achr3P20350_001	Banana	plastid	62.69	66.8
CDY65018	Canola	plastid	51.15	63.03
Solyc02g090540.2.1	Tomato	plastid	59.23	62.6
KRH28499	Soybean	plastid	61.92	60.75
GSMUA_Achr10P...	Banana	cytosol, plastid	55.77	60.42
KRH04638	Soybean	mitochondrion	63.46	60.0
KRH57891	Soybean	mitochondrion	61.54	59.93
PGSC0003DMT400025952	Potato	mitochondrion	59.23	58.78
Solyc02g065060.2.1	Tomato	mitochondrion	59.62	58.27
PGSC0003DMT400002020	Potato	extracellular	57.69	57.03
CDY67513	Canola	plastid	60.0	56.93
CDY65649	Canola	plastid	60.0	56.93
Bra030018.1-P	Field mustard	plastid	60.0	56.93
AT3G50560.1	Thale cress	plastid	59.23	56.62
Bra036090.1-P	Field mustard	plastid	58.46	55.47
CDY52823	Canola	plastid	58.08	55.11
VIT_00s0379g00050.t01	Wine grape	cytosol	22.31	15.38

Protein Annotations

EnsemblPlants:EES14019	EnsemblPlantsGene:SORBI_3007G158200	EntrezGene:8083556	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
ncoils:Coil	PANTHER:PTHR43431	PFAM:PF00106	PRINTS:PR00081	ProteinID:EES14019	ProteinID:EES14019.1
RefSeq:XP_002444524.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0001A87ADB	UniProt:C5YML9	MapMan:35.2

Description

hypothetical protein

Coordinates

chr7:+:59256036..59261113

Molecular Weight (calculated)

27122.0 Da

IEP (calculated)

6.875

GRAVY (calculated)

0.038

Length

260 amino acids

Sequence
(BLAST)

001: MLRSVSGSNS SRGIAAVVGV GPRLGSAVAR KFASEGYTIA ILSRDLEKLS QLAEEIAQEA KAQVFALRVD CADARSVREA FEGVLSLGPV EVLVYNACEP
101: PAANGDDAAA ARPTPFLAVT PDAFHRALAV SAGGAFHCAQ QVIPGMVERG RGTIIFTGSS ASVTGFAGYS DLSCGKFALR GLSQSLAREF QPAGVHIAHV
201: IIDGVIGERR SPTPRSSRVG SAGDAAGADP DAVAQSYWHV HAQDKSAWTH EMDIRSPSFM

Best Arabidopsis Sequence Match ( AT3G50560.1 )
(BLAST)

001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSIA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF

Arabidopsis Description

AT3g50560/T20E23_160 [Source:UniProtKB/TrEMBL;Acc:Q943Z4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.