CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67513	Canola	plastid	98.91	98.91
CDY65018	Canola	plastid	72.63	94.31
AT3G50560.1	Thale cress	plastid	92.7	93.38
CDY52823	Canola	plastid	93.07	93.07
Solyc02g090540.2.1	Tomato	plastid	62.41	69.51
KRH57891	Soybean	mitochondrion	66.79	68.54
PGSC0003DMT400025952	Potato	mitochondrion	65.33	68.32
PGSC0003DMT400002020	Potato	extracellular	65.33	68.06
KRH28499	Soybean	plastid	65.69	67.92
Solyc02g065060.2.1	Tomato	mitochondrion	64.96	66.92
KRH04638	Soybean	mitochondrion	65.33	65.09
GSMUA_Achr3P20350_001	Banana	plastid	56.2	63.11
Os08t0476300-02	Rice	mitochondrion	57.3	61.09
EES14019	Sorghum	mitochondrion	56.93	60.0
Zm00001d031808_P001	Maize	mitochondrion, plastid	55.11	58.75
GSMUA_Achr10P...	Banana	cytosol, plastid	49.27	56.25
VIT_00s0379g00050.t01	Wine grape	cytosol	25.18	18.3

Protein Annotations

EnsemblPlants:CDY65649	EnsemblPlantsGene:GSBRNA2T00047927001	Gene3D:3.40.50.720	GO:A0A078JG34	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43431	PFAM:PF00106	PRINTS:PR00081	ProteinID:CDY65649	ProteinID:CDY65649.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EAE8E3	UniProt:A0A078JG34	MapMan:35.2	:	:

Description

BnaCnng48060DBnaCnng48060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JG34]

Coordinates

chrLK034877:+:2293..4967

Molecular Weight (calculated)

29758.4 Da

IEP (calculated)

7.250

GRAVY (calculated)

-0.054

Length

274 amino acids

Sequence
(BLAST)

001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSVA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSSSYTSHHP TSFTHIPFQS FHTSLSVSVF AAFLCAQQVI PGMMEKGKGT ILFTGCSASL NGVAGFSELC CGKFALRALS QCLAREYQAF GIHVAHVIID
201: GVVGPPRETN IPQRGMVAEQ SYNFRSEDGE GEGESSGVMG MDPDVLAQTY WSLHVQDRRA WTQELDIRPS NTRF

Best Arabidopsis Sequence Match ( AT3G50560.1 )
(BLAST)

001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSIA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF

Arabidopsis Description

AT3g50560/T20E23_160 [Source:UniProtKB/TrEMBL;Acc:Q943Z4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.