Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g090540.2.1 | Tomato | plastid | 88.55 | 94.31 |
| PGSC0003DMT400002020 | Potato | extracellular | 82.44 | 82.13 |
| KRH57891 | Soybean | mitochondrion | 74.43 | 73.03 |
| CDY65018 | Canola | plastid | 58.78 | 72.99 |
| KRH04638 | Soybean | mitochondrion | 73.28 | 69.82 |
| KRH28499 | Soybean | plastid | 69.47 | 68.68 |
| AT3G50560.1 | Thale cress | plastid | 68.7 | 66.18 |
| Bra036090.1-P | Field mustard | plastid | 68.7 | 65.69 |
| Bra030018.1-P | Field mustard | plastid | 68.32 | 65.33 |
| CDY52823 | Canola | plastid | 68.32 | 65.33 |
| CDY65649 | Canola | plastid | 68.32 | 65.33 |
| CDY67513 | Canola | plastid | 68.32 | 65.33 |
| GSMUA_Achr3P20350_001 | Banana | plastid | 60.31 | 64.75 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 56.49 | 61.67 |
| Os08t0476300-02 | Rice | mitochondrion | 59.54 | 60.7 |
| EES14019 | Sorghum | mitochondrion | 58.78 | 59.23 |
| Zm00001d031808_P001 | Maize | mitochondrion, plastid | 57.63 | 58.75 |
| VIT_00s0379g00050.t01 | Wine grape | cytosol | 28.24 | 19.63 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400025952 | EnsemblPlantsGene:PGSC0003DMG400010021 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR43431 |
| PFAM:PF00106 | PGSC:PGSC0003DMG400010021 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI000295B40C |
| UniProt:M1AME3 | MapMan:35.2 | : | : | : | : |
Description
Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400010021]
Coordinates
chr2:+:44234245..44236469
Molecular Weight (calculated)
28775.6 Da
IEP (calculated)
7.418
GRAVY (calculated)
0.057
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTMASSVSS RGIAAIVGVG PNLGRSIARK FAHEGYTVAI LARDLDRLSR FADEIAREEK AQVFAIRIDC SDLRSVREAF EGVLSLGFVE VLVYNAYQPV
101: SWNPTNFTDI KVEQFEKSIA VSSVGAFHCA QQVVPGMVER GRGTILFSGC SASLNGIAGY SELCCGKFAM RGLSECLARE FQPLGIHVAH VIIHGIVGAP
201: RLANCISCVC RGAMLSNSQQ SVRRDGLMDP DALAQTYWYL HIQDRSAWTQ EIDLHPFNQR DM
101: SWNPTNFTDI KVEQFEKSIA VSSVGAFHCA QQVVPGMVER GRGTILFSGC SASLNGIAGY SELCCGKFAM RGLSECLARE FQPLGIHVAH VIIHGIVGAP
201: RLANCISCVC RGAMLSNSQQ SVRRDGLMDP DALAQTYWYL HIQDRSAWTQ EIDLHPFNQR DM
001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSIA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF
Arabidopsis Description
AT3g50560/T20E23_160 [Source:UniProtKB/TrEMBL;Acc:Q943Z4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.