Factsheet for PGSC0003DMT400002020

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
plastid 5

Predictors

GFP

MS/MS

Papers

extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g065060.2.1	Tomato	mitochondrion	95.44	94.36
PGSC0003DMT400025952	Potato	mitochondrion	82.13	82.44
KRH57891	Soybean	mitochondrion	77.57	76.4
KRH04638	Soybean	mitochondrion	73.76	70.55
KRH28499	Soybean	plastid	70.34	69.81
CDY65018	Canola	plastid	55.51	69.19
AT3G50560.1	Thale cress	plastid	67.68	65.44
CDY65649	Canola	plastid	68.06	65.33
Bra030018.1-P	Field mustard	plastid	67.68	64.96
CDY67513	Canola	plastid	67.68	64.96
Bra036090.1-P	Field mustard	plastid	66.16	63.5
CDY52823	Canola	plastid	65.78	63.14
GSMUA_Achr3P20350_001	Banana	plastid	58.56	63.11
GSMUA_Achr10P...	Banana	cytosol, plastid	57.03	62.5
Os08t0476300-02	Rice	mitochondrion	58.94	60.31
Zm00001d031808_P001	Maize	mitochondrion, plastid	56.65	57.98
EES14019	Sorghum	mitochondrion	57.03	57.69
VIT_00s0379g00050.t01	Wine grape	cytosol	27.76	19.36

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.2	InterPro:DHB_DH	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0008667	GO:GO:0009058	GO:GO:0009987	GO:GO:0019290	GO:GO:0019748
GO:GO:0055114	UniProt:M0ZJH7	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	EnsemblPlantsGene:PGSC0003DMG400000767	PGSC:PGSC0003DMG400000767
EnsemblPlants:PGSC0003DMT400002020	PRINTS:PR01397	PANTHER:PTHR43431	InterPro:SDR_fam	SUPFAM:SSF51735	UniParc:UPI000296A1A9
SEG:seg	:	:	:	:	:

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400000767]

Coordinates

chr2:+:23667729..23670191

Molecular Weight (calculated)

28529.2 Da

IEP (calculated)

7.291

GRAVY (calculated)

0.009

Length

263 amino acids

Sequence
(BLAST)

001: MASSVSSKGI AAIVGVGPKL GRSIARKFAH EGYTVAILAR DLGRLSRFAD EIAREEKAQV FAIRIDCSDS RSIREAFEGV LSLGFVEVLV YNAHQPTSWH
101: PTNLTDIKVE QFEKSLAVSS VGAFHCAQQV LLGMVERGRG TILFTGCSAS LSGIPGYSEL CCGKFAMRGL SQCLAKEFQP LGVHVAHVII HGIVGAPARG
201: AIASSSQQRL LAGEQEQQQT GVWAGEVLMD PDGLAQTYWH LHIQDRSAWT QEIDLHPSNQ RYI

Best Arabidopsis Sequence Match ( AT3G50560.1 )
(BLAST)

001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSIA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF

Arabidopsis Description

AT3g50560/T20E23_160 [Source:UniProtKB/TrEMBL;Acc:Q943Z4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.