CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	cytosol, golgi, mitochondrion, nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES14019

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14910.1	EES14019	AT3G50560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038047_P001	Maize	plastid	78.21	75.78
TraesCS1D01G259500.1	Wheat	plastid	67.95	60.92
TraesCS1B01G270000.1	Wheat	plastid	66.03	60.59
Os05t0337400-01	Rice	extracellular, nucleus, plasma membrane, plastid	63.46	60.37
HORVU1Hr1G064750.1	Barley	plastid	64.1	58.82
TraesCS1A01G259700.2	Wheat	plastid	66.67	52.53
AT5G14910.1	Thale cress	plastid	42.31	37.08
CDX91016	Canola	plastid	41.03	36.99
GSMUA_Achr8P09820_001	Banana	plastid	44.87	36.46
Bra023492.1-P	Field mustard	plastid	41.03	35.75
CDX85578	Canola	plastid	40.38	35.59
VIT_14s0066g01780.t01	Wine grape	plastid	41.03	34.97
Bra006272.1-P	Field mustard	plastid	39.74	34.07
Solyc02g087150.2.1	Tomato	plastid	39.74	33.33
KRH18591	Soybean	plastid	38.46	32.43
PGSC0003DMT400001367	Potato	plastid	38.46	32.26
KRG93395	Soybean	nucleus, plastid	37.18	31.52
CDX78599	Canola	plastid	40.38	13.67
CDX70580	Canola	plastid	41.67	13.43

Protein Annotations

MapMan:17.7.2.3.3	Gene3D:3.30.70.100	EntrezGene:8082674	UniProt:C5XTL4	EnsemblPlants:EES05886	ProteinID:EES05886
ProteinID:EES05886.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0016020
GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:IPR006121	PFscan:PS50846	PANTHER:PTHR35756
EnsemblPlantsGene:SORBI_3004G317900	unigene:Sbi.10248	SignalP:SignalP-noTM	UniParc:UPI0001A85A40	RefSeq:XP_002452910.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:65365333..65367530

Molecular Weight (calculated)

16104.0 Da

IEP (calculated)

4.354

GRAVY (calculated)

0.156

Length

156 amino acids

Sequence
(BLAST)

001: MSSTAFSHLF PSAAVAAVSL LPRCVSFGAS GGAAPGWRRR SRSMAAATAE AAAPAYTSDS LVLYFKAEGT MEERAIPKIT ESLQGMEGVK DLEVLIEEGI
101: ASVVLTKETT VQATGVASNL VEAIQGAGFK LQTLSLSFDD FDDITAGAGG NVQPSE

Best Arabidopsis Sequence Match ( AT5G14910.2 )
(BLAST)

001: MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR KLSSIGEGGE GVAVAEEQPQ ETVSVPVSPS DMLTMFFQAD
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV

Arabidopsis Description

AT5g14910/F2G14_30 [Source:UniProtKB/TrEMBL;Acc:Q93VK7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.