CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY52823
CDY65018
CDY65649
CDY67513

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14910.1	CDY52823	AT3G50560.1	21798944
AT5G14910.1	CDY65018	AT3G50560.1	21798944
AT5G14910.1	CDY65649	AT3G50560.1	21798944
AT5G14910.1	CDY67513	AT3G50560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006272.1-P	Field mustard	plastid	38.18	96.7
CDX70580	Canola	plastid	95.66	91.12
CDX85578	Canola	plastid	32.32	84.18
AT5G14910.1	Thale cress	plastid	32.1	83.15
CDX91016	Canola	plastid	31.02	82.66
VIT_14s0066g01780.t01	Wine grape	plastid	19.52	49.18
KRH18591	Soybean	plastid	18.44	45.95
PGSC0003DMT400001367	Potato	plastid	18.0	44.62
Solyc02g087150.2.1	Tomato	plastid	18.0	44.62
KRG93395	Soybean	nucleus, plastid	17.79	44.57
GSMUA_Achr8P09820_001	Banana	plastid	18.44	44.27
EES05886	Sorghum	plastid	13.67	40.38
Zm00001d038047_P001	Maize	plastid	13.88	39.75
Os05t0337400-01	Rice	extracellular, nucleus, plasma membrane, plastid	13.45	37.8
HORVU1Hr1G064750.1	Barley	plastid	13.23	35.88
TraesCS1B01G270000.1	Wheat	plastid	13.02	35.29
TraesCS1D01G259500.1	Wheat	plastid	13.23	35.06
TraesCS1A01G259700.2	Wheat	plastid	12.36	28.79

Protein Annotations

MapMan:11.10.2.1.1	MapMan:17.7.2.3.3	Gene3D:3.30.70.100	GO:A0A078CRC2	EnsemblPlants:CDX78599	ProteinID:CDX78599
ProteinID:CDX78599.1	InterPro:GASA	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150
GO:GO:0030001	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00130011001	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PFAM:PF02704	PRINTS:PR01217	PFscan:PS50846	PANTHER:PTHR35756	SUPFAM:SSF55008	UniParc:UPI0004EF2B77
SEG:seg	:	:	:	:	:

Description

BnaA03g05110D

Coordinates

chrLK031815:+:1446435..1450609

Molecular Weight (calculated)

49443.0 Da

IEP (calculated)

10.196

GRAVY (calculated)

-0.387

Length

461 amino acids

Sequence
(BLAST)

001: MASIAASSTF HSLSTFKSPN LSSTHLSKNL TFRTRPIENS RVCSFSAFTK QSRLGLRKLS CLGEGGEDGV AIADEEQQQQ QQQETVSVPV SPSDMLTMFF
101: QADGTLNEAA IPNVTKALQD IDGVSNLKVQ VSEGVAVVEL SKQTTVQATG VASSLVETIQ GAGFKLQTLN LSFEDEDEHK RPLLFNMRLH HFLTSHRMAL
201: SLLSVFIFLQ VFTNVVFAAS NEESNALVSL PTSPTSPAIK PPSPSYKPPS FPTTPIKPPT ITPPFKPPTT PVPPTSPPTY KPPTVKPPTT TPVKPPYKPP
301: TSPVKPPTMP PVKPPPTYKP PTPPVKPPTI PPVKPPTAPV KPTPIPPYKA PPVKPTPPPP VTTPPPAKPP VNPIPSPPVN APPVKPPSKP PTPPPVRPRI
401: NCVSLCGTRC GQHSRKNVCM RACVTCCYRC KCVPPGTYGN KEKCGACYVN MKTRGGRPKC P

Best Arabidopsis Sequence Match ( AT5G14910.2 )
(BLAST)

001: MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR KLSSIGEGGE GVAVAEEQPQ ETVSVPVSPS DMLTMFFQAD
101: GTLNEAAIPN VTRALQDIDG VSNLKVQVSE GVAVVELLKQ TTVQATGVAS NLVETIQGAG FKLQTLNLSF EDDDEVLV

Arabidopsis Description

AT5g14910/F2G14_30 [Source:UniProtKB/TrEMBL;Acc:Q93VK7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.